View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1492_low_73 (Length: 205)

Name: NF1492_low_73

Description: NF1492

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF1492_low_73

[»] chr5 (4 HSPs)

[»] chr8 (2 HSPs)

Alignment Details

Target: chr5 (Bit Score: 62; Significance: 5e-27; HSPs: 4)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 62; E-Value: 5e-27

Query Start/End: Original strand, 92 - 205

Target Start/End: Original strand, 36621507 - 36621620

Alignment:

Q	92	tcaagaacggagcacacaatcatcatgttgaaccttgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattc	191	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\| \|\|\|
T	36621507	tcaagaacggagcacacagtcatcacttccaacattgtttggattaagagaggcatattgaagaagctcaaaatcatgttcaaatttagccatatatttc	36621606	T

Q	192	tcttccatgttcac	205	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36621607	tcttccatgttcac	36621620	T

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Target: chr5; HSP #2

Raw Score: 60; E-Value: 9e-26

Query Start/End: Original strand, 126 - 205

Target Start/End: Original strand, 36626775 - 36626854

Alignment:

Q	126	ttgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcac	205	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36626775	ttgtttggattaaaagacgcatattgaagaagctcaaattcatgttcaaacttagccatataattatcttccatgttcac	36626854	T

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Target: chr5; HSP #3

Raw Score: 45; E-Value: 8e-17

Query Start/End: Original strand, 50 - 98

Target Start/End: Complemental strand, 36628536 - 36628488

Alignment:

Q	50	aatgtttgagtttaaagaaacaagaataaattcgatacttattcaagaa	98	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	36628536	aatgtttgagtttaaagaaacaagaataaattcgatacttattgaagaa	36628488	T

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Target: chr5; HSP #4

Raw Score: 38; E-Value: 0.000000000001

Query Start/End: Original strand, 104 - 205

Target Start/End: Original strand, 36631994 - 36632095

Alignment:

Q	104	cacacaatcatcatgttgaaccttgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttc	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\| \|\|\| \| \|\| \|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|
T	36631994	cacacaatcatcatctctaacattgtttggatcaagagaggtatactcaaaaagctcaaagtcatgttcaaacttagccatataattatctttcatgttc	36632093	T

Q	204	ac	205	Q
		\|\|
T	36632094	ac	36632095	T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 111 - 205

Target Start/End: Complemental strand, 34330216 - 34330122

Alignment:

Q	111	tcatcatgttgaaccttgtctggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcac	205	Q
		\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	34330216	tcatcatgttaaacattggttggattaagagaggcatattgaagaagcttcacttcatgctcaaacttagtcatatcattctcttccatattcac	34330122	T

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Target: chr8; HSP #2

Raw Score: 35; E-Value: 0.00000000007

Query Start/End: Original strand, 131 - 205

Target Start/End: Complemental strand, 34321288 - 34321214

Alignment:

Q	131	tggattaaaagaggcatattgaagaacctcaaattcatgttcaaacttggccatataattctcttccatgttcac	205	Q
		\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \| \|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34321288	tggattcaaagaggcatgtcgaagaagctcaacttcatgctcaaacttagtcatgtaattgtcttccatgttcac	34321214	T

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