View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_8 (Length: 605)
Name: NF1492_low_8
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 3713212 - 3713580
Alignment:
| Q |
1 |
ttttttctctgaggatttgagaagggtgacaaagtagttatcttcttcaaaagaaggggttctaaggtttgaagaagtgttgttgttagtacccattaga |
100 |
Q |
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| T |
3713212 |
ttttttctctgacgatttgagaagggtgacaaagtagttatcttcttcaaaagaaggggttctaaggtttgaagaagtgatgttgttagtacccattaga |
3713311 |
T |
|
| Q |
101 |
gatgaaagtaagcttcttttggtttgttttggtgaggattcttcaggtaagttttgaaaaggtgatttttgggtttgaagagacaaaggagataatgaag |
200 |
Q |
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| T |
3713312 |
gatgaaagtaagcttcttttggtttgttttggtgaggattcttcaggtaagttttgaaaaggtgatttttgggtttgaagagacaaaggagataatgaag |
3713411 |
T |
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| Q |
201 |
aagaatccatcatcaagtttggattttgagagaaacccagatgaaatctttgcatgaaatggtgaatgaagcaaatgggtcggtgattgtatgaaaaaag |
300 |
Q |
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| T |
3713412 |
aagaatccatcatcaagtttggattttgagagaaacccagatgaaatctttgcatgaaatggtgaatgaagcaaatgggtcggtgagtgtatgaaaaaag |
3713511 |
T |
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| Q |
301 |
tagagaactttacttgagagtgtgaatgtggttttgcagaagacagagaaaggagagagaaagattgtg |
369 |
Q |
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| T |
3713512 |
tagagaactttacttgagagtgtgaatgtggttttgcagaagacagagaaaggagagagaaagattgtg |
3713580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 468 - 594
Target Start/End: Original strand, 3713688 - 3713814
Alignment:
| Q |
468 |
cacgcgctgtttttggggaagagtgtggagtactagagtgtactattttgctgcatgatacagaacacagtgttcaaactgtgaagtttgaaaaagatac |
567 |
Q |
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| T |
3713688 |
cacgcgctgtttttggggaagagtgtggagtactagagtgtactattttgctgcatgatacagaacacagtgttcaaactgtgaagtttgaaaaagatac |
3713787 |
T |
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| Q |
568 |
actcggaagtagtacactttattatat |
594 |
Q |
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| T |
3713788 |
actcggaggtagtacactttattatat |
3713814 |
T |
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