View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1492_low_9 (Length: 574)
Name: NF1492_low_9
Description: NF1492
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1492_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 197 - 555
Target Start/End: Complemental strand, 40357290 - 40356932
Alignment:
| Q |
197 |
gtatcaatactagttatgccacatgaatgaaactcaacacttttgcaaagagttcaatttaaattcttaaaatctgaattttttcatcacgtgaaaattt |
296 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40357290 |
gtatcaatactagttatgccacatgaatgaaactcaacacttttgcaaagagttcaatttaaattcttaaaatctgaattttttcatcacgtgaacattt |
40357191 |
T |
|
| Q |
297 |
ttcaggtttgaaaaatttcagctcttacttacactcatctttctttcttttgacacaaagtccaattctggtcttcatgagttaggaaagagatgcttaa |
396 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40357190 |
ttcaggtttgaaaattttcagctcttacttacactcatctttctttcttttgacacaaagtccaattctggtcttcatgagttaggaaagagatgcttaa |
40357091 |
T |
|
| Q |
397 |
aatgcttcaaggtcaaaactcaaaattggcaaatagaatttgatcaaaagtgggaaaatttccatgggcacaatttttgcttgtgaaattgtgagatcaa |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
40357090 |
aatgcttcaaggtcaaaactcaaaattggcaaatagaatttgatcaaaagtgggaaaatttccttgggcacaatttttacttgtgaaattgtgagatcaa |
40356991 |
T |
|
| Q |
497 |
gatcgataagcatgcactgttatatttattgtgcgctctccttccgatacgagctaggt |
555 |
Q |
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| T |
40356990 |
gatcgataagcatgcactgttatatttattgtgcgctctccttccgatacgagctaggt |
40356932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 40357826 - 40357630
Alignment:
| Q |
1 |
ctcttaatcgaaaattcaatcattcttttaaaacaagtagaaatttcaaacaaatatgcttgcaaataatggtaaatcacaactttgaaagaaaaagtat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
40357826 |
ctcttaatcgaaaattcaatcattcttttaaaacaagtagaaatttcaaacaaatatggttgaaaa-aatggtaaatcacaactttgaaagaaaaagtat |
40357728 |
T |
|
| Q |
101 |
tccaatagtttttgcaataaccaaggaactataactatatnnnnnnnnnnnnnnnnnntcatcgaaggattttattttcttttgccattgctagcagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
40357727 |
tccaatagtttttgcaataaccaaggaactataactatatgaagaagaagaagaagaatcatcgaaggattttattttcttttgccattgctagcagt |
40357630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 197 - 555
Target Start/End: Original strand, 34247229 - 34247587
Alignment:
| Q |
197 |
gtatcaatactagttatgccacatgaatgaaactcaacacttttgcaaagagttcaatttaaattcttaaaatctgaattttttcatcacgtgaaaattt |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34247229 |
gtatcaatactagttatgccacatgaatgaaactcaacacttttgcaaagagttcaatttaaattcttaaaatctgaattttttcatcacgtgaacattt |
34247328 |
T |
|
| Q |
297 |
ttcaggtttgaaaaatttcagctcttacttacactcatctttctttcttttgacacaaagtccaattctggtcttcatgagttaggaaagagatgcttaa |
396 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34247329 |
ttcaggtttgaaaattttcagctcttacttacactcatctttctttcttttgacacaaagtccaattctggtcttcatgagttaggaaagagatgcttaa |
34247428 |
T |
|
| Q |
397 |
aatgcttcaaggtcaaaactcaaaattggcaaatagaatttgatcaaaagtgggaaaatttccatgggcacaatttttgcttgtgaaattgtgagatcaa |
496 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
34247429 |
aatgcttcaaggtcaaaactcaaaattggcaaatagaatttgatcaaaagtgggaaaatttccttgggcacaatttttacttgtgaaattgtgagatcaa |
34247528 |
T |
|
| Q |
497 |
gatcgataagcatgcactgttatatttattgtgcgctctccttccgatacgagctaggt |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34247529 |
gatcgataagcatgcactgttatatttattgtgcgctctccttccgatacgagctaggt |
34247587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 7e-66
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 34246693 - 34246889
Alignment:
| Q |
1 |
ctcttaatcgaaaattcaatcattcttttaaaacaagtagaaatttcaaacaaatatgcttgcaaataatggtaaatcacaactttgaaagaaaaagtat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
34246693 |
ctcttaatcgaaaattcaatcattcttttaaaacaagtagaaatttcaaacaaatatggttgaaaa-aatggtaaatcacaactttgaaagaaaaagtat |
34246791 |
T |
|
| Q |
101 |
tccaatagtttttgcaataaccaaggaactataactatatnnnnnnnnnnnnnnnnnntcatcgaaggattttattttcttttgccattgctagcagt |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34246792 |
tccaatagtttttgcaataaccaaggaactataactatatgaagaagaagaagaagaatcatcgaaggattttattttcttttgccattgctagcagt |
34246889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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