View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14930_high_1 (Length: 650)
Name: NF14930_high_1
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14930_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 168; Significance: 1e-89; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 24551948 - 24552135
Alignment:
| Q |
1 |
agtattgttggaaagttaagaagagtacgcacgcaatgctagttttaaggaaaagttgttgctaattctacttcatattgtattgtgttgtcaaatacac |
100 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24551948 |
agtagtgttggaaagttaagaagattacgcacgcaatgctagttttaaggaaaagttgttgctaattctacttcatattgtattgtgttgtcaaatacac |
24552047 |
T |
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| Q |
101 |
ttattatcattatctcaacactcaacaaaacaaaagttggatcctcccttgagaaactatggagaagaaaatgataacttccgaacta |
188 |
Q |
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| T |
24552048 |
ttattatcattatctcaacactcaacagaacaaaacttggatcctcccttgagaaactatggagaagaaaatgataacttccaaacta |
24552135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 34345315 - 34345263
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
598 |
Q |
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| T |
34345315 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt |
34345263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 532 - 615
Target Start/End: Complemental strand, 54045423 - 54045339
Alignment:
| Q |
532 |
ctcattgttattaataaaaaa-tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactca |
615 |
Q |
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| T |
54045423 |
ctcattgttattaataaaaaaatgccacacaaaggtggtatgggagtggtattgccacctagggtggtcagcgtataagcactca |
54045339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 434 - 505
Target Start/End: Complemental strand, 54046210 - 54046139
Alignment:
| Q |
434 |
tttagagaaatgatagatcgacacacctttcaattgtacacacttataccattgcatatgtggtttttaatt |
505 |
Q |
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| T |
54046210 |
tttagagaaatgatagatcgacacacctttcaattgtacacacttataccactgcatatgtggcatttaatt |
54046139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 545 - 598
Target Start/End: Complemental strand, 2922118 - 2922066
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
598 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
2922118 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggt |
2922066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 2923316 - 2923368
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggt |
598 |
Q |
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| T |
2923316 |
ataaaaaatgccacacaagggtggcatgggagtggta-tgccacctagagtggt |
2923368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 545 - 616
Target Start/End: Original strand, 25331844 - 25331914
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat |
616 |
Q |
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| T |
25331844 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat |
25331914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 597
Target Start/End: Complemental strand, 25323725 - 25323674
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtgg |
597 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
25323725 |
ataaaaaatgccacacaagggtggtatgggagtggta-tgccacctagagtgg |
25323674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 553 - 614
Target Start/End: Complemental strand, 7739262 - 7739201
Alignment:
| Q |
553 |
tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc |
614 |
Q |
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||||||||||||||||||| | |||||||||||||||| |||||| || ||||||| |||| |
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| T |
7739262 |
tgccacacaagggtggtatatgggtggtattgccacctatggtggttagtgtataaggactc |
7739201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 553 - 614
Target Start/End: Original strand, 36200871 - 36200932
Alignment:
| Q |
553 |
tgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactc |
614 |
Q |
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||||||||||||||||||| | |||| ||||||||||| |||||| || ||||||| |||| |
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| T |
36200871 |
tgccacacaagggtggtatatgggtgggattgccacctatggtggttagtgtataaggactc |
36200932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 545 - 616
Target Start/End: Complemental strand, 18481324 - 18481254
Alignment:
| Q |
545 |
ataaaaaatgccacacaagggtggtatgggagtggtattgccacctagggtggtcagagtataagcactcat |
616 |
Q |
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|||||||||||||||||||| |||||||||||||||| |||||||||| ||||| | ||||||| |||||| |
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| T |
18481324 |
ataaaaaatgccacacaaggatggtatgggagtggta-tgccacctagagtggtatgtgtataagtactcat |
18481254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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