View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14930_high_4 (Length: 337)
Name: NF14930_high_4
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14930_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 4555834 - 4555526
Alignment:
| Q |
18 |
aatgtttcaacggtaataacaacagttaaccgaccccaacataagaaagggttatggcaccaatcatgaaacatataatgataaacaacaaattatgtag |
117 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555834 |
aatgtttcaacggtaataacaacagatagccgaccccagcataagaaagggttatggcaccaatcatgaaacatataatgataaacaacaaattatgtag |
4555735 |
T |
|
| Q |
118 |
gtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctgatgctattgtaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
4555734 |
gtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaataaattcctttcatcgctcacctttgatggtattgtaag |
4555635 |
T |
|
| Q |
218 |
taaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatcattttgtcaattt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4555634 |
taaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggactctatgactgtagaggtgatgtcacaggatcattttgtcaattt |
4555535 |
T |
|
| Q |
318 |
tgtgtctct |
326 |
Q |
| |
|
||||||||| |
|
|
| T |
4555534 |
tgtgtctct |
4555526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 106 - 325
Target Start/End: Original strand, 3075425 - 3075644
Alignment:
| Q |
106 |
caaattatgtaggtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctga |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| | ||||| |
|
|
| T |
3075425 |
caaattatgtaggtgatgattgtcacaattcaactgaaaaatcacttacaactacatacaaatccaaccttaataaagtcctttcattgctctcatctga |
3075524 |
T |
|
| Q |
206 |
tgctattgtaagtaaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| | ||||| |||||||||||||| ||||||||| |
|
|
| T |
3075525 |
tgctattgtaagtaaaggatataatcatacaagtataggtgacaatacagttgatgctgtctatggtctgtatgattgtagaggtgatgtaacaggatca |
3075624 |
T |
|
| Q |
306 |
ttttgtcaattttgtgtctc |
325 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
3075625 |
ttttgtcaattttgtgtctc |
3075644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 106 - 326
Target Start/End: Original strand, 3085966 - 3086186
Alignment:
| Q |
106 |
caaattatgtaggtgatgattgtcacgattcaagagaacaatcacttacaactacatacaaatccaaccttaatatagtcctttcatcgctcacctctga |
205 |
Q |
| |
|
|||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||||||| |||||||||| |||||| ||| || ||||||| |
|
|
| T |
3085966 |
caaattatgtaggtgatgattgtcacaactcaaccgaacaatctcttacagctacatacaaatctaaccttaataaagtcctctcacttctttcctctga |
3086065 |
T |
|
| Q |
206 |
tgctattgtaagtaaaggatataatcacacaagcataggagacaacacagttgatgctgtctatggattctatgactgtagaggtgatgtcacaggatca |
305 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||| ||||||| ||||||||||||||||| |||||| |
|
|
| T |
3086066 |
tgctattgtaagtaaaggatataatcatacaagcataggagagaacacaattgatgctgtctatggtctctatgattgtagaggtgatgtcactggatca |
3086165 |
T |
|
| Q |
306 |
ttttgtcaattttgtgtctct |
326 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3086166 |
ttttgtcaattttgtgtctct |
3086186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 30406147 - 30406195
Alignment:
| Q |
63 |
aaagggttatggcaccaatcatgaaacatataatgataaacaacaaatt |
111 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
30406147 |
aaagggttctggcaccaatcatgaaacttataatgaaaaacaacaaatt |
30406195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25096012 - 25096060
Alignment:
| Q |
50 |
accccaacataagaaagggttatggcaccaatcatgaaacatataatga |
98 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
25096012 |
acccaaacataagaaggggttctggcaccaatcatgaaacttataatga |
25096060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 25153982 - 25154030
Alignment:
| Q |
50 |
accccaacataagaaagggttatggcaccaatcatgaaacatataatga |
98 |
Q |
| |
|
|||| |||||||||| ||||| |||||||||||||||||| |||||||| |
|
|
| T |
25153982 |
acccaaacataagaaggggttctggcaccaatcatgaaacttataatga |
25154030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 31250960 - 31250924
Alignment:
| Q |
50 |
accccaacataagaaagggttatggcaccaatcatga |
86 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
31250960 |
acccaaacataagaaagggttatggcaccaatcatga |
31250924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 10383385 - 10383341
Alignment:
| Q |
67 |
ggttatggcaccaatcatgaaacatataatgataaacaacaaatt |
111 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
10383385 |
ggttttggcaccaatcatgaaacttataatgataaattacaaatt |
10383341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University