View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14930_high_6 (Length: 234)

Name: NF14930_high_6
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14930_high_6
NF14930_high_6
[»] chr4 (6 HSPs)
chr4 (14-216)||(39870103-39870304)
chr4 (14-216)||(36013791-36013991)
chr4 (14-216)||(47326635-47326828)
chr4 (14-216)||(47341431-47341624)
chr4 (84-165)||(55514254-55514335)
chr4 (14-48)||(55514359-55514393)
[»] chr3 (1 HSPs)
chr3 (14-216)||(31598633-31598833)
[»] chr6 (2 HSPs)
chr6 (112-216)||(16765351-16765455)
chr6 (14-120)||(16764934-16765040)
[»] chr5 (1 HSPs)
chr5 (78-149)||(9142120-9142191)
[»] chr8 (1 HSPs)
chr8 (14-52)||(35943085-35943123)
[»] chr2 (1 HSPs)
chr2 (14-48)||(15602825-15602859)
[»] chr7 (1 HSPs)
chr7 (14-51)||(6730159-6730196)


Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 39870304 - 39870103
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| |||||| |||||||||||||||||||| ||||       |||||||||||||||| ||||||||||||||||| |||||||||||||||||||    
T  39870304 tagcatgggaaagaaaagttgtttcccaccatggagaagtttttt-gaacagttagattaaagaggaacactgatttaataatagaccacacataccata 39870206  T
Q  114 tcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcataga 213  Q
    ||||||||||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39870205 tcttttttacactgtcttcaacctcatgagattgaatttcacccacatccactatcacggaaggatgaatcccattttcttcactgctcacagtcataga 39870106  T
Q  214 aac 216  Q
    |||    
T  39870105 aac 39870103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 36013991 - 36013791
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| ||||| ||||||||||| |||||||||| |||       ||||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  36013991 tagcatgggaaatgaaagttgtttaccaccatgggaaagtttttttgaacagttagattaaagtggaacactgatttaatcatagaccacacataccata 36013892  T
Q  114 tcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcataga 213  Q
    ||||||||||| |  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  36013891 tcttttttacagt--cttcaacctcatgagattgaatttcacccacatccactatcacggaaggatgaatcccattttcttcactgctcacagtcataga 36013794  T
Q  214 aac 216  Q
    |||    
T  36013793 aac 36013791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 47326828 - 47326635
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| |||||||||||||||||||||||||||| |||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47326828 tagcatgggaaaggaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccata 47326729  T
Q  114 tcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcataga 213  Q
    ||||||||||| | ||||||| |||  |||||||||| |||||||| |||||||||||        |||||||||||||||||| || ||||||||||||    
T  47326728 tcttttttacactgtcttcaatctc--gagattgaatttcacccacatccactatcac-------cgaatcccattttcttcactgcccacagtcataga 47326638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 47341624 - 47341431
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| |||||||||||||||||||||||||||| |||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  47341624 tagcatgggaaaggaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccata 47341525  T
Q  114 tcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcataga 213  Q
    ||||||||||| | ||||||| |||  |||||||||| |||||||| |||||||||||        |||||||||||||||||| || ||||||||||||    
T  47341524 tcttttttacactgtcttcaatctc--gagattgaatttcacccacatccactatcac-------cgaatcccattttcttcactgcccacagtcataga 47341434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 55514335 - 55514254
Alignment:
Q  84 ctgatttaatcatagaccacacataccatatcttttttacattatcttcaacctcatgagattgaatctcacccacgtccac 165  Q
    ||||||||||||||||| || || |||||||||| ||||| || |||||||||||||| ||||||| || ||||||||||||    
T  55514335 ctgatttaatcatagactactcacaccatatcttgtttactttgtcttcaacctcatgggattgaaactaacccacgtccac 55514254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 55514393 - 55514359
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggg 48  Q
    |||||| ||||||||||||||||||||||||||||    
T  55514393 tagcatgggaaaggaaagttgtttcccaccatggg 55514359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 31598833 - 31598633
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| | |||| ||||||||||||||||||||| |||       |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31598833 tagcatggaaaagaaaagttgtttcccaccatgggaaagtttttttgaacagttagattaaagaggaacactgatttaatcatagaccacacataccata 31598734  T
Q  114 tcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcataga 213  Q
    ||||||  ||| | ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  31598733 tctttt--acactgtcttcaacctcatgagattgaatttcacccacatccactatcacggaaggatgaatcccattttcttcattgctcacagtcataga 31598636  T
Q  214 aac 216  Q
    |||    
T  31598635 aac 31598633  T

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Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 112 - 216
Target Start/End: Original strand, 16765351 - 16765455
Alignment:
Q  112 tatcttttttacattatcttcaacctcatgagattgaatctcacccacgtccactatcacggaaggatgaatcccattttcttcaccgctcacagtcata 211  Q
    ||||||||||||| | ||||||||||||||||||||||| |||||||| |||||||||| | ||||||||||||||||||||||||  |||||| |||||    
T  16765351 tatcttttttacactttcttcaacctcatgagattgaatttcacccacatccactatcatgaaaggatgaatcccattttcttcactactcacaatcata 16765450  T
Q  212 gaaac 216  Q
    |||||    
T  16765451 gaaac 16765455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 16764934 - 16765040
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaagnnnnnnngaacagttagattaaaaaggaacactgatttaatcatagaccacacataccata 113  Q
    |||||| ||||||||||||||||||||||||||||||||       ||||| |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16764934 tagcatgggaaaggaaagttgtttcccaccatggggaagtttttttgaacaattagattaaagaggaacacttatttaatcatagaccacacataccata 16765033  T
Q  114 tcttttt 120  Q
    | |||||    
T  16765034 tgttttt 16765040  T

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Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 9142120 - 9142191
Alignment:
Q  78 ggaacactgatttaatcatagaccacacataccatatcttttttacattatcttcaacctcatgagattgaa 149  Q
    ||||||||||||||||||||||| || || |||||||||| ||||| || |||||||||||||| |||||||    
T  9142120 ggaacactgatttaatcatagactacccacaccatatcttgtttactttgtcttcaacctcatgggattgaa 9142191  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 52
Target Start/End: Original strand, 35943085 - 35943123
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaag 52  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  35943085 tagcatgggaaagggaagttgtttcccaccatggggaag 35943123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 15602859 - 15602825
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggg 48  Q
    |||||||||||||| ||||||||||||||||||||    
T  15602859 tagcataggaaagggaagttgtttcccaccatggg 15602825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 6730196 - 6730159
Alignment:
Q  14 tagcataggaaaggaaagttgtttcccaccatggggaa 51  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  6730196 tagcatgggaaagggaagttgtttcccaccatggggaa 6730159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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