View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14930_low_2 (Length: 369)
Name: NF14930_low_2
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14930_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 320
Target Start/End: Original strand, 9449303 - 9449604
Alignment:
| Q |
14 |
cagagaccaaactaaatacattcccaaacggttgggacttcgatagcggaagccatgaatggttaaaagaggatctaaccatattttttatgtcgaaaat |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
9449303 |
cagagaccaaactaaatacattcccaaacggttgggacttcgatagcggaagccatgaatggttaaaggaggatctaaccatattttttatgtcgaaaat |
9449402 |
T |
|
| Q |
114 |
tgctcttctcccttttagacttggtcattaccttaaatacattgtaatagttaactgttcgcccgctgacacttttaagatcggctcattctattataca |
213 |
Q |
| |
|
||||||||||||||||||||| | ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
9449403 |
tgctcttctcccttttagactagatcattcccttaaatacatcgtaatagttaactgttctcccgctgacacttttaaaatcggctcattctattataca |
9449502 |
T |
|
| Q |
214 |
ctaatcatatatatgagaagaatgggattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgttagtgtagtgc |
313 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
9449503 |
ctaatcatatatatgagaagaatgagattaaggataataacttg-----caagtaatctttgtattctatctttgattgtactttctgttagtgtagtac |
9449597 |
T |
|
| Q |
314 |
aattaga |
320 |
Q |
| |
|
||||||| |
|
|
| T |
9449598 |
aattaga |
9449604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 204 - 351
Target Start/End: Original strand, 9450012 - 9450159
Alignment:
| Q |
204 |
ctattatacactaatcatatatatgagaagaatgggattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgtt |
303 |
Q |
| |
|
|||||| ||||||| |||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9450012 |
ctattacacactaaacatatagatgagaagaacgagattaaggataataacttgcagtacaagtaatctttgtattctatctttgattgtactttctgtt |
9450111 |
T |
|
| Q |
304 |
agtgtagtgcaattagattagtgttgtacaattagaatatgcctatat |
351 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
9450112 |
agtgtagtaaaattagattagtgtagtacagttagaatatgcctatat |
9450159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 204 - 277
Target Start/End: Original strand, 19117490 - 19117563
Alignment:
| Q |
204 |
ctattatacactaatcatatatatgagaagaatgggattaaggataataacttgcagtacaagtaatctttgta |
277 |
Q |
| |
|
|||||| ||||||| |||| | |||||| ||||| | ||||||| ||||||||||||| |||||||||| |||| |
|
|
| T |
19117490 |
ctattacacactaagcatacaaatgagatgaatgagcttaaggaaaataacttgcagtgcaagtaatctctgta |
19117563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University