View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14930_low_3 (Length: 368)
Name: NF14930_low_3
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14930_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 28 - 354
Target Start/End: Complemental strand, 41072653 - 41072327
Alignment:
| Q |
28 |
cgagtttacataaattaaatgagttaactgagtttgacaaccctacaagtaagtgtatgtgaatgaaaaagcatattgattcgtattgaattgagttaac |
127 |
Q |
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| T |
41072653 |
cgagtttacataaactaaatgagttaaccaagtttgacaaccctacaagtaagtgtttgtgaatgaaaaagcatattgattcgtattgaattgagttaac |
41072554 |
T |
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| Q |
128 |
cgaaagggagcatattgaattgataacctacacttgaatgagatattgttgtgtagcaagtgtgatgtagggagtctcccattgcttagaaaaatgaagg |
227 |
Q |
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| T |
41072553 |
cgaaagggagtatattgaattgataacctacacttgaatgagatattgttgtgtagcaagtgtgatgtagggagtctcccattgcttaaaaaaatgaagg |
41072454 |
T |
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| Q |
228 |
ctaaacattttacaagaaagatgattcataaatccaatgtattaagattttcaataaagatgcgatgtcaatttacatgtgtggttactcttgatccaat |
327 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41072453 |
ctaaacattttataagaaagatgattcataaatccaatgtattaagattttcaataaagatgcgatgtcaatttacatgtgtggttactcttgatccaat |
41072354 |
T |
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| Q |
328 |
atgcatgatcctctcctccaaactccc |
354 |
Q |
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| T |
41072353 |
atatatgatcctctcctccagactccc |
41072327 |
T |
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