View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14930_low_4 (Length: 344)
Name: NF14930_low_4
Description: NF14930
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14930_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 45024945 - 45024667
Alignment:
| Q |
1 |
aagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatctggtcaaaacatttatgcatataatataaa |
100 |
Q |
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| T |
45024945 |
aagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcactagtaattcccatctgatcaaaacatttatgcatataatataaa |
45024846 |
T |
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| Q |
101 |
tgcaatgattactaaataatcctccctctgaattggcatataaacaaatttggactgaattgtgcatattnnnnnnnncgagttacaattttcttattat |
200 |
Q |
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| T |
45024845 |
tgcaatgattactatataatcctccctctgaattggcatataaacaaatttggactgaattgtgcatatt-aaaaaaacgagttacaattttattattat |
45024747 |
T |
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| Q |
201 |
aattcattccagcacatgatatgagagtatgttttaattttctgaggcttactagtatgttacattacatgcaaagaaaa |
280 |
Q |
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| T |
45024746 |
aattcagtccagcacatgattagagagtatgttttaattttctgaggcttacaagtatgttaaattacatgcaaagaaaa |
45024667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 30437700 - 30437753
Alignment:
| Q |
4 |
catatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
57 |
Q |
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| T |
30437700 |
catatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 30471806 - 30471858
Alignment:
| Q |
4 |
catatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
56 |
Q |
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||||||||| | || |||||||| |||||||||||||||||| || ||||||| |
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| T |
30471806 |
catatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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