View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14931_low_2 (Length: 437)
Name: NF14931_low_2
Description: NF14931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14931_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 32168802 - 32168379
Alignment:
| Q |
1 |
aacaataaccc--taccctcattttttccttacaacctaggaattagagtctaatacatcaattttatccgagtaaataaaattttcccaaaaaatagat |
98 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32168802 |
aacaataacccagtaccctcactttttccttacaacctaggaattagactctaatacatcaattttatccgagtaaataaaattttcccaaaaaatagat |
32168703 |
T |
|
| Q |
99 |
gaaaacgattttatacatgtaccatcattttaatttcctgataaatcctnnnnnnnnnnnnnnnnnntgtttatattactcatctttaattataaaaatt |
198 |
Q |
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| T |
32168702 |
gaaaacgattttatacatgtaccatcattttaatttcctgataaatcctaaaaaaaatccaaaaaaatgtttatattactcatctttaattataaaaatt |
32168603 |
T |
|
| Q |
199 |
atatgaagtttatttctctttcttttgttccacgtaaaaagatttttctctttgaccaaacttttgatgaagtgctattttcagaaacattccaattatc |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32168602 |
atatgaagtttatttctctttcttttgttccacgtaaaaagattttgctctttgaccaaacttttgataaagtgctattttcagaaacattccaattatc |
32168503 |
T |
|
| Q |
299 |
tttaccatttctttttcggttttattggtttaagctctctgctctgtagcttttacaactactaccttgccattttggcactactttacagtcctgaatt |
398 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32168502 |
tttaccatttctttttcggtttcattggtttaagctctctgctctgtagcttttacaactactaccttgctattttggcactactttacagtcctgaatt |
32168403 |
T |
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| Q |
399 |
tttctaaaattttgatctctgtta |
422 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
32168402 |
tttctaaaattttgatctctgtta |
32168379 |
T |
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