View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14931_low_4 (Length: 261)

Name: NF14931_low_4
Description: NF14931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14931_low_4
NF14931_low_4
[»] chr5 (1 HSPs)
chr5 (44-241)||(32980385-32980582)
[»] chr4 (1 HSPs)
chr4 (126-217)||(2635084-2635178)
[»] chr6 (1 HSPs)
chr6 (145-217)||(578872-578945)
[»] chr7 (1 HSPs)
chr7 (146-194)||(12306920-12306968)
[»] chr2 (2 HSPs)
chr2 (148-219)||(3352021-3352093)
chr2 (126-171)||(9943344-9943391)
[»] chr1 (1 HSPs)
chr1 (148-219)||(34387761-34387833)


Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 44 - 241
Target Start/End: Original strand, 32980385 - 32980582
Alignment:
Q  44 ttttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgtttggttcccgcttttggacaagccaaaattgattctaggt 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32980385 ttttgttaatttaaatttaaggtagctgtttattgttttgtgagtgagtatagtgtatgtttggttcccgcttttggacaagccaaaattgattctaggt 32980484  T
Q  144 ataaaattgattttaacatgttttgttgttctttagtagaagtgattttgctgcagaattgattttacttgaagttaagactcatatcctttgattct 241  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||    
T  32980485 ataaaattgattttaacatgttttgttgttttttagtagaagtgattttgctgcagaattgattttacttgaagttaagatttatatcttttgattct 32980582  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 126 - 217
Target Start/End: Original strand, 2635084 - 2635178
Alignment:
Q  126 ccaaaattgattctag--gtataaaattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaag 217  Q
    ||||||||||||||||  || ||||||||||||| ||||||||  ||| | || ||||||| |||||||| || ||||||||||| | |||||||    
T  2635084 ccaaaattgattctagaagtgtaaaattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaag 2635178  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 217
Target Start/End: Original strand, 578872 - 578945
Alignment:
Q  145 taaaattgattttaacatgttttgttgttctttagtagaagtgattttgc-tgcagaattgattttacttgaag 217  Q
    ||||||||||||| |||||||| |||||| || ||||||| | ||||||| || |||||||||  |||||||||    
T  578872 taaaattgattttgacatgtttagttgtttttaagtagaaataattttgcttgtagaattgatactacttgaag 578945  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 12306920 - 12306968
Alignment:
Q  146 aaaattgattttaacatgttttgttgttctttagtagaagtgattttgc 194  Q
    |||||||||||| |||||||| |||| |||| ||||||| |||||||||    
T  12306920 aaaattgattttgacatgtttggttgctcttgagtagaattgattttgc 12306968  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 3352021 - 3352093
Alignment:
Q  148 aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt 219  Q
    |||||||| | |||| |||||||||| || ||||||| |||| ||| || || ||||||||||||||||||||    
T  3352021 aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt 3352093  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 9943344 - 9943391
Alignment:
Q  126 ccaaaattgattct--aggtataaaattgattttaacatgttttgttg 171  Q
    ||||||||||||||  |||| |||||||||||||||||||||| ||||    
T  9943344 ccaaaattgattctgaaggtgtaaaattgattttaacatgtttggttg 9943391  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 34387833 - 34387761
Alignment:
Q  148 aattgattttaacatgttttgttgttctttagtagaagtgattttg-ctgcagaattgattttacttgaagtt 219  Q
    |||||||| | |||| |||||||||| || ||||||| |||| ||| || || ||||||||||||||||||||    
T  34387833 aattgattctgacattttttgttgttgttgagtagaaatgatcttgtcttcataattgattttacttgaagtt 34387761  T

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