View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14931_low_8 (Length: 212)

Name: NF14931_low_8
Description: NF14931
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14931_low_8
NF14931_low_8
[»] scaffold0182 (3 HSPs)
scaffold0182 (13-148)||(11100-11235)
scaffold0182 (155-198)||(11006-11049)
scaffold0182 (169-198)||(10966-10995)
[»] chr3 (4 HSPs)
chr3 (13-158)||(5885290-5885438)
chr3 (13-119)||(54946341-54946447)
chr3 (155-198)||(5885220-5885264)
chr3 (155-198)||(54946237-54946281)
[»] chr7 (2 HSPs)
chr7 (13-119)||(47933539-47933645)
chr7 (155-198)||(47933435-47933479)
[»] chr6 (2 HSPs)
chr6 (13-119)||(16856259-16856365)
chr6 (155-198)||(16856433-16856477)
[»] chr4 (3 HSPs)
chr4 (13-158)||(43942499-43942647)
chr4 (13-158)||(2501200-2501347)
chr4 (155-198)||(43942673-43942717)
[»] chr2 (1 HSPs)
chr2 (13-82)||(26231049-26231118)


Alignment Details
Target: scaffold0182 (Bit Score: 128; Significance: 2e-66; HSPs: 3)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 11235 - 11100
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  11235 catcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctata 11136  T
Q  113 tgataacaaatattccttttccttttctgctcattc 148  Q
    ||||||||||||||||||||||||||||||||||||    
T  11135 tgataacaaatattccttttccttttctgctcattc 11100  T

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Target: scaffold0182; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 11049 - 11006
Alignment:
Q  155 attttttcttacttttccaccatgtctactattgatgtcaataa 198  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11049 attttttcttacttttccaccatgtctactattgatgtcaataa 11006  T

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Target: scaffold0182; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 198
Target Start/End: Complemental strand, 10995 - 10966
Alignment:
Q  169 ttccaccatgtctactattgatgtcaataa 198  Q
    ||||||||||||||||||||||||||||||    
T  10995 ttccaccatgtctactattgatgtcaataa 10966  T

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Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 5885438 - 5885290
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5885438 catctccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttccctttttccctttcacctata 5885339  T
Q  113 tgataacaaa---tattccttttccttttctgctcattctgtaatattt 158  Q
    ||||||| ||    | ||   ||||||||||||||||||||||||||||    
T  5885338 tgataaccaacgcaaatctcattccttttctgctcattctgtaatattt 5885290  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 54946447 - 54946341
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  54946447 catcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctata 54946348  T
Q  113 tgataac 119  Q
    |||||||    
T  54946347 tgataac 54946341  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 5885264 - 5885220
Alignment:
Q  155 attttttctt-acttttccaccatgtctactattgatgtcaataa 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  5885264 attttttcttgacttttccaccatgtctactattgatgtcaataa 5885220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 54946281 - 54946237
Alignment:
Q  155 attttttctt-acttttccaccatgtctactattgatgtcaataa 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  54946281 attttttcttgacttttccaccatgtctactattgatgtcaataa 54946237  T

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Target: chr7 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 47933645 - 47933539
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  47933645 catcaccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttaactcatccatatttccctttttccctttcacctata 47933546  T
Q  113 tgataac 119  Q
    |||||||    
T  47933545 tgataac 47933539  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Complemental strand, 47933479 - 47933435
Alignment:
Q  155 attttttctt-acttttccaccatgtctactattgatgtcaataa 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  47933479 attttttcttgacttttccaccatgtctactattgatgtcaataa 47933435  T

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Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 16856259 - 16856365
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  16856259 catcgccattgaatttgtctgtttacattcttccacataaaggttaaaaagatgttacattttagctcatccatatttctctttttccctttcacctata 16856358  T
Q  113 tgataac 119  Q
    |||||||    
T  16856359 tgataac 16856365  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 16856433 - 16856477
Alignment:
Q  155 attttttctt-acttttccaccatgtctactattgatgtcaataa 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  16856433 attttttcttgacttttccaccatgtctactattgatgtcaataa 16856477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 13 - 158
Target Start/End: Original strand, 43942499 - 43942647
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |    
T  43942499 catcaccattgaatttgtctgtttacattcttccatataaaggttaaaaagatgttacattttagatcatccatatttccctttttccctttcacctaca 43942598  T
Q  113 tgataacaaa---tattccttttccttttctgctcattctgtaatattt 158  Q
    ||||||| ||    | ||   ||||||||||||||||||||||||||||    
T  43942599 tgataaccaacgcaaatctcattccttttctgctcattctgtaatattt 43942647  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 158
Target Start/End: Complemental strand, 2501347 - 2501200
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcatccatatttccctttttccctttcaactata 112  Q
    ||||| |||||||| ||||||||||||||||| ||||||||  |||||||||||||||||||||| |||||   |||| ||||||||||||||| |||||    
T  2501347 catcatcattgaatgtgtctgtttacattctttcacataaagcttaaaaagatgttacattttagatcatcttaattttcctttttccctttcacctata 2501248  T
Q  113 tgataa-ca-aatattccttttccttttctgctcattctgtaatattt 158  Q
    | |||| || | || ||   ||||||||||||||||||||||| ||||    
T  2501247 taataatcacactaatctcattccttttctgctcattctgtaacattt 2501200  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 198
Target Start/End: Original strand, 43942673 - 43942717
Alignment:
Q  155 attttttctt-acttttccaccatgtctactattgatgtcaataa 198  Q
    |||||||||| ||||||||||||||||||||||||||||||||||    
T  43942673 attttttcttgacttttccaccatgtctactattgatgtcaataa 43942717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 26231118 - 26231049
Alignment:
Q  13 catcaccattgaatttgtctgtttacattcttccacataaaagttaaaaagatgttacattttagctcat 82  Q
    ||||| ||||| || ||| ||||||||||||||||||||||  ||||| |||||||||||||||| ||||    
T  26231118 catcatcattggatgtgtatgtttacattcttccacataaagcttaaagagatgttacattttagatcat 26231049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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