View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_high_5 (Length: 378)
Name: NF14932_high_5
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 362
Target Start/End: Original strand, 31937194 - 31937556
Alignment:
| Q |
1 |
gccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaa-catgtcatatactatgttgtacatgtttatt |
99 |
Q |
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| T |
31937194 |
gccatgaatcctcggtttgctgggaaccaaaatgagtatgctaggtcaaatgattcaatggtacgtaaacatgtcatatactatgttgtacatgtttatt |
31937293 |
T |
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| Q |
100 |
ggtagcatgtatgtttcaaaaatcacgtttgatannnnnnnnnnaaagtgcaacttgtgaaaacacaggtggataatgaaaaccctggagttataaatag |
199 |
Q |
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| T |
31937294 |
gttagcatgtatgtttcaaaaatcacgtttgatactttttttttaaagtgcaacttgtgaaaacacaggtggataatgaaaaccctggagttataaatag |
31937393 |
T |
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| Q |
200 |
tgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtgcactttgaagtttgagttccaatgttcca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31937394 |
tgtacctggtggcatgggagcatccatggcaactgcgactgcagatcgagttaagaaaaacaaatgaagtgcactttgaagtttgagttccaatgttcca |
31937493 |
T |
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| Q |
300 |
atttgtttttcagcagtgttttattttaccnnnnnnnggctgtgtattattatgacttaaagt |
362 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
31937494 |
atttgtttttcagcagtgttttattttacctttttttggctgtgtattattatgacttaaagt |
31937556 |
T |
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