View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_1 (Length: 822)
Name: NF14932_low_1
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 711; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 711; E-Value: 0
Query Start/End: Original strand, 18 - 744
Target Start/End: Original strand, 34677833 - 34678559
Alignment:
| Q |
18 |
gtttggttcaagttttgtgtattaattgccttgattttgaaggagggaaagatgaaaatattagatatatgtaacttaaggtttgtttggtgtgtatcta |
117 |
Q |
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| T |
34677833 |
gtttggttcaagttttgtgtattaattgccttgattttgaaggagggaaagatgaaaatattagatatatgtaacttaaggtttgtttggtgtgtatcta |
34677932 |
T |
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| Q |
118 |
tgcttggctttgcctcaacatgaagctttttagcatatagtttttggagtttggactatgacataaaattaacttctatatggaaaatgacacactctct |
217 |
Q |
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| T |
34677933 |
tgcttggctttgcctcaacatgaagctttttagcatatagtttttggagtttggactatgacataaaattaacttctatatggaaaatgacacactctct |
34678032 |
T |
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| Q |
218 |
acttggagtgaaaattcaggaagctttatttctttttattttggtctcttggtaatatatgcaaatataaggttgttgaagccccttggtaaagggttgt |
317 |
Q |
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| T |
34678033 |
acttggagtgaaaattcaggaagctttatttctttttattttggtctcttggtaatatatgcaaatataaggttgttgaagccccttggtaaagggttgt |
34678132 |
T |
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| Q |
318 |
tttggtgaaaaagacttcataaaggattgattagcaattaagagaagtttctttgactagaatcaatattattgctgatttgtctctattaaaaaatgat |
417 |
Q |
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| T |
34678133 |
tttggtgaaaaagacttcataaaggattgattagcaattaagagaagtttctttgactagaatcaatattattgctgatttgtctctattaaaaaatgat |
34678232 |
T |
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| Q |
418 |
gttaggtggaagaaattatgtcttatcattatcaagtttattgtcaccaattctgtctaggggatactaaacaaaaatgttgcaacttacaaccatgtcc |
517 |
Q |
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| T |
34678233 |
gttaggtggaagaaattatgtcttatcattatcaagtttattgtcaccaattctgtctaggggatactaaacaaaaatgttgcaacttacaaccatgtcc |
34678332 |
T |
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| Q |
518 |
ttgagaataagccagaatttctttcacaaatgagcatttactaaattccttgaagtattttataagcataaatagaagtctaatttataaacttctagat |
617 |
Q |
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| T |
34678333 |
ttgagaataagccataatttctttcacaaatgagcatttactaaattccttgaagtattttataagcataaatagaagtctaatttataaacttctagat |
34678432 |
T |
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| Q |
618 |
gaatctaattaatttcattacaaaccttatttctatttgcacccatcctatatgcagtattgtcatcgatatgaggttggaagtattttttatgtgaaga |
717 |
Q |
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| T |
34678433 |
gaatcttattaatttcattacaaaccttatttctatttgcacccatcctatatgcaatattgtcatcgatatgaggttggaagtatttcttatgtgaaga |
34678532 |
T |
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| Q |
718 |
agtgcacattagttgttaacctgcatt |
744 |
Q |
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| T |
34678533 |
agtgcacattagttgttaacctgcatt |
34678559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 773 - 808
Target Start/End: Original strand, 34678588 - 34678623
Alignment:
| Q |
773 |
ttattgtcatgaattacttcctccgccatgcctatg |
808 |
Q |
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| T |
34678588 |
ttattgtcatgaattacttcctccgccatgcctatg |
34678623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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