View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_10 (Length: 337)
Name: NF14932_low_10
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 28059249 - 28059563
Alignment:
| Q |
19 |
tactttattggcaacgggacgtactacaattctagcatgttcttacttccaaccaatattattatttctcaaaagaaaattaaactcccaaccaaccatt |
118 |
Q |
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| T |
28059249 |
tactttattggcaacgggacgtactacaattctagcatgttcttacttccaaccaatattattatttctcaaaagaaaattaaactcccaactaaccatt |
28059348 |
T |
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| Q |
119 |
atatgtattctaaactgaccactgttgtgagtttctaagtttat-ata-aaatataaatcccatgctatcacgtgacgggcggcactcatagtttagtgg |
216 |
Q |
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| T |
28059349 |
atatgtattctaaactgaccactgtggtgagtttctaagtttattatataaatataaatcccatgctatcacgtgacgggcggcactcatagtttagtgg |
28059448 |
T |
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| Q |
217 |
tccacagataaataaattagtaaaaactaatatattattatttgtgttttggtgcaaagtaaaaactgtactatatatgaataatattttaagcaatgat |
316 |
Q |
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| T |
28059449 |
tccacagataaataaattagtaaaaactaatctattattatttgtgttttggtgcaaagtaaaaactatactatatatgaataatattttaagcaatgat |
28059548 |
T |
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| Q |
317 |
tatatatgatgatgt |
331 |
Q |
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||||||||||||||| |
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| T |
28059549 |
tatatatgatgatgt |
28059563 |
T |
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