View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_12 (Length: 296)
Name: NF14932_low_12
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_12 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 40310233 - 40310510
Alignment:
| Q |
19 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaca |
118 |
Q |
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| T |
40310233 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaat |
40310332 |
T |
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| Q |
119 |
atatttagtgaattcattttttgtttcacttaattatgttccaaacaaagagtgcagaaattaatttgaacttacataaaatgcagtaacagtaccagca |
218 |
Q |
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| T |
40310333 |
atattcaatgatttcagtttttgactcgcttaattatatttttaacaaagagtagggaaattaatatgaacttacataaaatgcagtaacagtaccagca |
40310432 |
T |
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| Q |
219 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcaccttggatgcaaacccgcaacct |
296 |
Q |
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| T |
40310433 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcacctttgatgcaaacccgcaacct |
40310510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 40320309 - 40320586
Alignment:
| Q |
19 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaca |
118 |
Q |
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| T |
40320309 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaat |
40320408 |
T |
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| Q |
119 |
atatttagtgaattcattttttgtttcacttaattatgttccaaacaaagagtgcagaaattaatttgaacttacataaaatgcagtaacagtaccagca |
218 |
Q |
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| T |
40320409 |
atattcaatgatttcagtttttgactcgcttaattatatttttaacaaagagtagggaaattaatatgaacttacataaaatgcagtaacagtaccagca |
40320508 |
T |
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| Q |
219 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcaccttggatgcaaacccgcaacct |
296 |
Q |
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| T |
40320509 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcacctttgatgcaaacccgcaacct |
40320586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 40329775 - 40330052
Alignment:
| Q |
19 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaca |
118 |
Q |
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| T |
40329775 |
gtttgaactgtgtaaggttgtccagtacggtttcccaagaactcaaaatccaactcatcacgtacactgtcagtgtcagagttcatctaccacaaaaaat |
40329874 |
T |
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| Q |
119 |
atatttagtgaattcattttttgtttcacttaattatgttccaaacaaagagtgcagaaattaatttgaacttacataaaatgcagtaacagtaccagca |
218 |
Q |
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| T |
40329875 |
atattcaatgatttcagtttttgactcgcttaattatatttttaacaaagagtagggaaattaatatgaacttacataaaatgcagtaacagtaccagca |
40329974 |
T |
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| Q |
219 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcaccttggatgcaaacccgcaacct |
296 |
Q |
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| T |
40329975 |
gaatctccagggacaagtttgatcttcatgcttacacgaccaaacaaatacttcacctttgatgcaaacccgcaacct |
40330052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 53501950 - 53501898
Alignment:
| Q |
188 |
acttacataaaatgcagtaacagtaccagcagaatctccagggacaagtttga |
240 |
Q |
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| T |
53501950 |
acttacgtaatatgcagtgacagtgccagcagagtttccagggacaagtttga |
53501898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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