View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_13 (Length: 237)
Name: NF14932_low_13
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 17 - 220
Target Start/End: Original strand, 14765835 - 14766038
Alignment:
| Q |
17 |
agaccaacctaaccacctaaaaataaataccacacccaaaaggccaccccacaagtcacaaaaagatggttcactgactcagtacaatccccaaagaggg |
116 |
Q |
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| T |
14765835 |
agaccaacctaaccacctaaaaataaataccacacccaaaaggccaccccacaagtcacaaaaagatggttcactgactcaatacaatccacaaagaggg |
14765934 |
T |
|
| Q |
117 |
tagaaactacaccaccttgattgacgatatttcgtctaagcagatctgctctagttgggatcctatcaatagaagctaccaagaaaaaacctgaaaggag |
216 |
Q |
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| T |
14765935 |
tagaaattgcaccaccttgattgacgatctttcgtctaagctaatctgctctagttgggatcctatcaatagaagctaccaagaaaaaacctaaaaggag |
14766034 |
T |
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| Q |
217 |
ccca |
220 |
Q |
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|||| |
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| T |
14766035 |
ccca |
14766038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 27099381 - 27099445
Alignment:
| Q |
20 |
ccaacctaaccacctaaaaataa-ataccacacccaaaaggccaccccacaagtcacaaaaagat |
83 |
Q |
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| T |
27099381 |
ccaacctaaccacttaaaaatcctataccacaccttagaggccaccccacaagtaacaaaaagat |
27099445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 27178922 - 27178858
Alignment:
| Q |
20 |
ccaacctaaccacctaaaaataa-ataccacacccaaaaggccaccccacaagtcacaaaaagat |
83 |
Q |
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||||||||||||| ||||||| |||||||||| | |||||||||||||||| |||||||||| |
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| T |
27178922 |
ccaacctaaccacttaaaaatcctataccacaccttagaggccaccccacaagtaacaaaaagat |
27178858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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