View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_14 (Length: 219)
Name: NF14932_low_14
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 9380852 - 9381038
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
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| T |
9380852 |
atgaatgcaaaaagttaccatggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
9380951 |
T |
|
| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9380952 |
aaaagccttagaattcttaaaagatgttccatacttagcaattgttcctgctgttagtctactatgtagcattatcactgaattcat |
9381038 |
T |
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Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 200
Target Start/End: Original strand, 55738865 - 55739051
Alignment:
| Q |
14 |
atgaatgcaaaaagttaccgtggaacctaattttgcttctaggagctggatttgccttagcagatggagtacaatctagtggtctagctgatgtaatgtc |
113 |
Q |
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|||||||||| || |||| ||||||||||||||| | || |||||||| ||||| ||||| |||||||| ||||||||||||||||| ||||| | || |
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| T |
55738865 |
atgaatgcaagaaactaccttggaacctaattttgttacttggagctggttttgctttagctgatggagttcaatctagtggtctagcagatgtgctttc |
55738964 |
T |
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| Q |
114 |
aaaagccttagaattcttaaaagatgttccatacttggcaattgttcctgctgttagtctactatgtagcattatcactgaattcat |
200 |
Q |
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||||| ||||| |||||| |||||| ||||| |||||||||| |||||| |||||||| || |||| ||||| ||||||||||| |
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| T |
55738965 |
taaagctttagatttcttagaagatgccccatatttggcaattgctcctgcagttagtcttataagtagtattattactgaattcat |
55739051 |
T |
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