View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14932_low_2 (Length: 533)
Name: NF14932_low_2
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 441
Target Start/End: Original strand, 38230718 - 38231141
Alignment:
| Q |
18 |
gaaattttatattttttcaactatattgattggaatttgatagaaatttagttannnnnnnatatcgatggttgatcctcgtggacaatggggatatgca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38230718 |
gaaattttatattttttcaactatattgattggaatttgatagaaatttagttatttttttatatcgatggtagatcctcgtggacaatggggatatgca |
38230817 |
T |
|
| Q |
118 |
acgctgtggaggaaaaacttcatgtggtggggaatgaagacaactaatagatcacttggatgagaaagtaaaaagtctctttcaatttaaccataggtct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38230818 |
acgctgtggaggaaaaacttcatgtggtggggaatgaagacaactaatagatcatttggatgagaaagtaaaaaatctctttcaatttaaccataggtct |
38230917 |
T |
|
| Q |
218 |
tggaattgagtcatgagaatgcaacaatgttaaatctcttgagaaagaattttgccatcaattataatcttatccttctagagagattaatctatgcaat |
317 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
38230918 |
tggaattgagtcatgagaatataacaatgttaaatctcttgagaaagaattttgccatcaattatagtcttatccatctagagagattaatctatgcaat |
38231017 |
T |
|
| Q |
318 |
tgtgcaaataatacacggttgaaaaaacattcaatgctaaaagtgttcattaattttttctttgaagcaagaaatgttcattaattcatttaaccaaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38231018 |
tgtgcaaataatacacggttgaaaaaacattcaatgctaaaaatgttcattaattttttctttgaagcaagaaatgttcattaattcatttaaccaaaga |
38231117 |
T |
|
| Q |
418 |
aaaagaatgatcattcattacatt |
441 |
Q |
| |
|
||||||||||||| |||||||||| |
|
|
| T |
38231118 |
aaaagaatgatcactcattacatt |
38231141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 425 - 523
Target Start/End: Original strand, 38231555 - 38231653
Alignment:
| Q |
425 |
tgatcattcattacattacatttatatataattatttaccatgttctaatgttcattcattcgatttttaggtactgagaaattttttatttacctatg |
523 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38231555 |
tgatcattcattacattacatttatatataattatttaccatgttctaatgttcattcattcgatttttaggtactgagaaattttttatttacctatg |
38231653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 221 - 271
Target Start/End: Complemental strand, 43346411 - 43346361
Alignment:
| Q |
221 |
aattgagtcatgagaatgcaacaatgttaaatctcttgagaaagaattttg |
271 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
43346411 |
aatttagtcatgagaatgcaacaatgttaaatctcttgaggaagagttttg |
43346361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University