View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_3 (Length: 514)
Name: NF14932_low_3
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 10 - 496
Target Start/End: Original strand, 19113787 - 19114272
Alignment:
| Q |
10 |
aaaaatattataggaaatggacaataaatataagtgtattatgcaaataatatctttttcaatcctttgtccttctcgagcgcctttcaaattttcaatt |
109 |
Q |
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| T |
19113787 |
aaaaatgttataggaaatggacaatgaataaaagtgtattatgcaaattatatctttttcaattctttgtccttctcgagcgccttttaaattttcaatt |
19113886 |
T |
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| Q |
110 |
ttcctcttattaaaattttgtaatctgaactagatttacacatagaccatacctatttgtgacagtgaacacannnnnnngggtcaaatttacgtctatt |
209 |
Q |
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| T |
19113887 |
ttcctcttattaaaattttgtaatctgaactagatttacacatagaccatacctatttgttacagtgaacatattttttttg-tcaaatttatgtctact |
19113985 |
T |
|
| Q |
210 |
ttcttgcaacacacatnnnnnnn-ttacaatgaaaaatataatgaaagagcgggtaacatattgcaaagataacgttaaacatgcataaaactaatatca |
308 |
Q |
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| T |
19113986 |
tgcttgcaacacgcataaaaataattataa-gaaaaatataatgaaagagcaagtaacacattttaaagataacgttaaataggcataaaactaatatca |
19114084 |
T |
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| Q |
309 |
aaatatacaaaatatttagaacaacatgtttaaacagtaaaacatatttcacacaaaatatgtagagcgtagcacatctgaatatcggtttagctacatc |
408 |
Q |
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|| ||||||||||||||||||||| | | ||| | |||||||||||||| ||||||||||||||| |||||||||| ||||| | ||||| ||||||| |
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| T |
19114085 |
aactatacaaaatatttagaacaatacatctaagctataaaacatatttcaaacaaaatatgtagagtgtagcacatccgaataccagtttaactacatc |
19114184 |
T |
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| Q |
409 |
tcctccatatcaccatccaacttagctacttgtcctccctggacatgtattggaaactggcctaccagatcgttgaaccgcacataaa |
496 |
Q |
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| T |
19114185 |
tcctccatatcaccatccaactcagctacttgtcctccctagacatgtattgcaaactggcctaccagatcgttgaactgcacataaa |
19114272 |
T |
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