View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14932_low_4 (Length: 496)

Name: NF14932_low_4
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14932_low_4
NF14932_low_4
[»] chr4 (4 HSPs)
chr4 (19-471)||(16010677-16011129)
chr4 (389-432)||(843150-843193)
chr4 (388-440)||(2796545-2796597)
chr4 (414-446)||(44412345-44412377)
[»] chr5 (4 HSPs)
chr5 (383-438)||(9895148-9895203)
chr5 (375-432)||(15086705-15086762)
chr5 (368-438)||(15086633-15086703)
chr5 (403-451)||(4206314-4206362)
[»] scaffold0330 (1 HSPs)
scaffold0330 (388-431)||(4362-4405)
[»] chr8 (2 HSPs)
chr8 (388-433)||(1592036-1592081)
chr8 (403-445)||(10170409-10170451)
[»] chr2 (5 HSPs)
chr2 (388-436)||(9956999-9957047)
chr2 (380-431)||(37232154-37232205)
chr2 (380-452)||(14268733-14268805)
chr2 (382-438)||(21186633-21186689)
chr2 (388-428)||(26144331-26144371)
[»] chr3 (3 HSPs)
chr3 (380-431)||(18268005-18268056)
chr3 (388-432)||(21768613-21768657)
chr3 (380-432)||(47542542-47542594)
[»] chr6 (2 HSPs)
chr6 (375-429)||(6074523-6074577)
chr6 (387-431)||(6074035-6074079)
[»] chr1 (3 HSPs)
chr1 (369-427)||(4796433-4796491)
chr1 (403-440)||(13759918-13759955)
chr1 (382-430)||(3148159-3148207)
[»] chr7 (2 HSPs)
chr7 (382-431)||(46179912-46179961)
chr7 (415-451)||(30177039-30177075)


Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 19 - 471
Target Start/End: Complemental strand, 16011129 - 16010677
Alignment:
Q  19 tttatgccttgcaacagagtggtttagatgttcaattcagtgaagctgaatgctataagattgattcaaagaacaacaaagtttactgcagatctagtca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16011129 tttatgccttgcaacagagtggtttagatgttcaattcagtgaagctgaatgctataagattgattcaaagaacaacaaagtttactgcagatctagtca 16011030  T
Q  119 agacaaaaagctcggtggcgtagaagaattttccattgattatgattacttagtaatagctatgggcgctcgttctaatacttttaacacacctggtgtt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16011029 agacaaaaagctcggtggcgtagaagaattttccattgattatgattacttagtaatagctatgggcgctcgttctaatacttttaacacacctggtgtt 16010930  T
Q  219 gaggagcatgcctacttcttgaaggtaagcaatcgcaaaaaatgtccatcgatgcgtctgcaattgcagttgtgatgttgaaattgtaattgcggttacc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16010929 gaggagcatgcctacttcttgaaggtaagcaatcgcaaaaaatgtccatcgatgcgtctgcaattgcagttgtgatgttgaaattgtaattgcggttacc 16010830  T
Q  319 atgcaaacctttatattgtagtctctatactgatacctctgatcaaagacgtgtctgtgtccaacacctacacatgtgattgtgttcaaataatttattt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||    
T  16010829 atgcaaacctttatattgtagtctctatactgatacctctgatcaaagacgtgtctgtgtccaacacctacacatgtgattgcgttcaaatgatttattt 16010730  T
Q  419 tctcaaattattactggtgttgtcgtgtgagtgctagtgtcgcatccagtgtc 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16010729 tctcaaattattactggtgttgtcgtgtgagtgctagtgtcgcatccagtgtc 16010677  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 432
Target Start/End: Original strand, 843150 - 843193
Alignment:
Q  389 cacatgtgattgtgttcaaataatttattttctcaaattattac 432  Q
    |||||||||||  |||||||||||| ||||||||||||||||||    
T  843150 cacatgtgattacgttcaaataattcattttctcaaattattac 843193  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 440
Target Start/End: Complemental strand, 2796597 - 2796545
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaattattactggtgttg 440  Q
    ||||||||||||   ||||| ||||| ||||||||||||||||| ||||||||    
T  2796597 acacatgtgattaaattcaattaattcattttctcaaattattaatggtgttg 2796545  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 414 - 446
Target Start/End: Complemental strand, 44412377 - 44412345
Alignment:
Q  414 tattttctcaaattattactggtgttgtcgtgt 446  Q
    ||||||||||||||||||||||||||| |||||    
T  44412377 tattttctcaaattattactggtgttgacgtgt 44412345  T

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Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 9895203 - 9895148
Alignment:
Q  383 cacctacacatgtgattgtgttcaaataatttattttctcaaattattactggtgt 438  Q
    |||| ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9895203 caccaacacatgtgattacgttcaaataatttattttctcaaattattactggtgt 9895148  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 375 - 432
Target Start/End: Complemental strand, 15086762 - 15086705
Alignment:
Q  375 gtgtccaacacctacacatgtgattgtgttcaaataatttattttctcaaattattac 432  Q
    |||||| ||||| ||||||||||||  |||||||||||| | ||||||||||||||||    
T  15086762 gtgtccgacaccaacacatgtgattacgttcaaataattcactttctcaaattattac 15086705  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 368 - 438
Target Start/End: Complemental strand, 15086703 - 15086633
Alignment:
Q  368 cgtgtctgtgtccaacacctacacatgtgattgtgttcaaataatttattttctcaaattattactggtgt 438  Q
    |||||| |||||  ||||| ||||||||||||  || ||||||||| | ||||||||||||||| ||||||    
T  15086703 cgtgtcagtgtctgacacccacacatgtgattacgtgcaaataattaactttctcaaattattattggtgt 15086633  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 451
Target Start/End: Complemental strand, 4206362 - 4206314
Alignment:
Q  403 ttcaaataatttattttctcaaattattactggtgttgtcgtgtgagtg 451  Q
    |||||||| ||||||||||||||||||||  ||||||| ||||| ||||    
T  4206362 ttcaaatattttattttctcaaattattaacggtgttgacgtgtcagtg 4206314  T

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Target: scaffold0330 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 431
Target Start/End: Complemental strand, 4405 - 4362
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaattatta 431  Q
    ||||||||||||||||| |||||||| |||||||||||||||||    
T  4405 acacatgtgattgtgtttaaataattcattttctcaaattatta 4362  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 388 - 433
Target Start/End: Complemental strand, 1592081 - 1592036
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaattattact 433  Q
    |||||||||||||  |||||||||| ||||||||||||||||||||    
T  1592081 acacatgtgattgcattcaaataatatattttctcaaattattact 1592036  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 10170409 - 10170451
Alignment:
Q  403 ttcaaataatttattttctcaaattattactggtgttgtcgtg 445  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||    
T  10170409 ttcaattaatttattttctcaaattattattggtgttgacgtg 10170451  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 436
Target Start/End: Original strand, 9956999 - 9957047
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaattattactggt 436  Q
    |||||||| |||  |||||||||||||||||| ||||||||||||||||    
T  9956999 acacatgtcattacgttcaaataatttattttgtcaaattattactggt 9957047  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 37232154 - 37232205
Alignment:
Q  380 caacacctacacatgtgattgtgttcaaataatttattttctcaaattatta 431  Q
    ||||||| |||||||||||| ||||||||||||| ||||| |||| ||||||    
T  37232154 caacaccgacacatgtgattatgttcaaataattcattttatcaagttatta 37232205  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 452
Target Start/End: Original strand, 14268733 - 14268805
Alignment:
Q  380 caacacctacacatgtgattgtgttcaaataatttattttctcaaattattactggtgttgtcgtgtgagtgc 452  Q
    ||||||| |||||| | |||  |||||| ||| | |||||||||||||||||| ||||||| ||||| |||||    
T  14268733 caacaccgacacatatcattacgttcaattaagtcattttctcaaattattaccggtgttgacgtgtcagtgc 14268805  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 438
Target Start/End: Original strand, 21186633 - 21186689
Alignment:
Q  382 acacctacacatgtgattgtgttcaaataatttattttctcaaattattactggtgt 438  Q
    ||||| ||||||||||||  |||||||||||| | |||||||||| ||||| |||||    
T  21186633 acaccgacacatgtgattacgttcaaataattcactttctcaaatcattaccggtgt 21186689  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 26144331 - 26144371
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaatta 428  Q
    ||||||||||||  |||||||||||| ||||||||||||||    
T  26144331 acacatgtgattccgttcaaataattaattttctcaaatta 26144371  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 431
Target Start/End: Original strand, 18268005 - 18268056
Alignment:
Q  380 caacacctacacatgtgattgtgttcaaataatttattttctcaaattatta 431  Q
    ||||||| ||||||||||||  |||||| ||||| |||||||||||||||||    
T  18268005 caacaccgacacatgtgattacgttcaattaattcattttctcaaattatta 18268056  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 432
Target Start/End: Complemental strand, 21768657 - 21768613
Alignment:
Q  388 acacatgtgattgtgttcaaataatttattttctcaaattattac 432  Q
    ||||||||| ||  |||||||||||| ||||||||||||||||||    
T  21768657 acacatgtggttacgttcaaataattcattttctcaaattattac 21768613  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 380 - 432
Target Start/End: Complemental strand, 47542594 - 47542542
Alignment:
Q  380 caacacctacacatgtgattgtgttcaaataatttattttctcaaattattac 432  Q
    ||||||| ||||||||||||   |||||||| || ||||||||||||||||||    
T  47542594 caacaccgacacatgtgattacattcaaatagttcattttctcaaattattac 47542542  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 6074577 - 6074523
Alignment:
Q  375 gtgtccaacacctacacatgtgattgtgttcaaataatttattttctcaaattat 429  Q
    ||||| |||||| ||||||||||||  |||||| ||||| |||||||||||||||    
T  6074577 gtgtctaacaccaacacatgtgattacgttcaactaattcattttctcaaattat 6074523  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 431
Target Start/End: Complemental strand, 6074079 - 6074035
Alignment:
Q  387 tacacatgtgattgtgttcaaataatttattttctcaaattatta 431  Q
    ||||||| |||||  |||||||||||| |||||||||||||||||    
T  6074079 tacacatatgattacgttcaaataattcattttctcaaattatta 6074035  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 427
Target Start/End: Complemental strand, 4796491 - 4796433
Alignment:
Q  369 gtgtctgtgtccaacacctacacatgtgattgtgttcaaataatttattttctcaaatt 427  Q
    ||||| |||||| ||||  |||||||||||| ||||||| ||||||||||| |||||||    
T  4796491 gtgtcggtgtccgacactgacacatgtgattatgttcaattaatttattttttcaaatt 4796433  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 13759918 - 13759955
Alignment:
Q  403 ttcaaataatttattttctcaaattattactggtgttg 440  Q
    |||||||||||||||||||||||||||||  |||||||    
T  13759918 ttcaaataatttattttctcaaattattatcggtgttg 13759955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Complemental strand, 3148207 - 3148159
Alignment:
Q  382 acacctacacatgtgattgtgttcaaataatttattttctcaaattatt 430  Q
    ||||| |||||||||||| | || || ||||||||||||||||||||||    
T  3148207 acaccgacacatgtgattatattaaattaatttattttctcaaattatt 3148159  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 431
Target Start/End: Original strand, 46179912 - 46179961
Alignment:
Q  382 acacctacacatgtgattgtgttcaaataatttattttctcaaattatta 431  Q
    ||||| |||||||||||| | ||||| |||||||||||||||| ||||||    
T  46179912 acaccgacacatgtgattatattcaattaatttattttctcaacttatta 46179961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 415 - 451
Target Start/End: Original strand, 30177039 - 30177075
Alignment:
Q  415 attttctcaaattattactggtgttgtcgtgtgagtg 451  Q
    |||||||||||||||||||||||||| ||||| ||||    
T  30177039 attttctcaaattattactggtgttgacgtgtcagtg 30177075  T

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