View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14932_low_5 (Length: 478)
Name: NF14932_low_5
Description: NF14932
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14932_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 52 - 464
Target Start/End: Original strand, 30105822 - 30106238
Alignment:
| Q |
52 |
ttggatttccaactgtcactaactactcatcttgaccaactag---aacatctctaaaatgtctgatctcaatcaaacaatcaataaaataagttaactt |
148 |
Q |
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||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |
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| T |
30105822 |
ttggatttccaactgtcactaactactcatcctcaccaactagtagaacatctctaaaacatctgatctcaatcaaacaatcgataaaataagttaactt |
30105921 |
T |
|
| Q |
149 |
taacnnnnnnncaaattaaaattatccaatttaaaatttaaattgtccgatctcaatcaaactatcacagatcatctgactacataaatgcgtacagtta |
248 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| | |
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| T |
30105922 |
taacttttattcaaattaaaattatcaaatttaaaatttaaattgtccgatctcaatcaaactatcaccgatcatctgactaaataaatgcgtacagtca |
30106021 |
T |
|
| Q |
249 |
atgacaaagaggggatcaccactaagaccaaccaaaaatagagtcactctttg-agtcttttctccctcttctcctcttgttgtcataacctgataaata |
347 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30106022 |
atgacaaagagaggatcaccactaagaccaaccaaaaatagagtcactcttgggagtcttttctccctcttctcctcttgttgtcataacctgataaata |
30106121 |
T |
|
| Q |
348 |
atcactccaattatatttccacactatgaacaagtaaagtaaaacccaaactaaataaaccctcacactaatttatttcttcaatcatcatcatcatctc |
447 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
30106122 |
atcactccaattatatttccacactatgaacaagtaaagtaaaacccaaactaaataaaccctcatactaatttatttcttcaatcatcatcatcatctc |
30106221 |
T |
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| Q |
448 |
ttcactaaaatccaaac |
464 |
Q |
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||||||||||||||||| |
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| T |
30106222 |
ttcactaaaatccaaac |
30106238 |
T |
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