View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14933_high_2 (Length: 513)
Name: NF14933_high_2
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 33 - 505
Target Start/End: Original strand, 10525065 - 10525526
Alignment:
| Q |
33 |
gcttgttgctgattgaattatttggttggctgaagagtgataatcaaagtgaatttcacaaaaaataggggagaagttatttggaataagagtgtagtgt |
132 |
Q |
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| T |
10525065 |
gcttgttgctgattgaattatttggttggctgaagggtgataatcaaagtgaatttcacaaaaaataggggagaagttatttggaataagagtgtagtgt |
10525164 |
T |
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| Q |
133 |
tcaagtatggtattgcgatgatgatgcaaggcacgaag--gtacagtaatacatcccataaatagtggttgtggtgccgaaacagcgatgcagcagtgct |
230 |
Q |
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| T |
10525165 |
tcaagtatggtattacgatgatgatgcaaggcacaaagaagtaca--agtacaac-----------ggttatggtgtcgaaacagcgatgcggcagcact |
10525251 |
T |
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| Q |
231 |
actcaaccatttgtatatcagcacatcacttttggttgtagctgtgtaccttatacctagcctagtttggataaactattcctagaaataggaaatatta |
330 |
Q |
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| T |
10525252 |
actcaaccatttgtatatcaacacatcacttttagttgtagctgtgtaccttatacctagcctagtttggataatctatttctagaaataggaaatatta |
10525351 |
T |
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| Q |
331 |
aaagaatcttcgtagtttatcttataagttgaaggtgatattagtttctgcagcataactctttcattcaacaaagcctaccgtatacaaacttttttag |
430 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10525352 |
aaaggatcttcgtagtttatcttataagttgaaggtggtattagtttctgcagcataactctttcattcaacaaagcctaccgtatacaaacttttttag |
10525451 |
T |
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| Q |
431 |
gtgaaactatcagacttattttaattaaaatttaagaactttatcataagctagaagctaatccaaagtgaacct |
505 |
Q |
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| T |
10525452 |
gtgaaactatcagacttattttaattaaaatttaagaactttatcataagctagaagctaatccaaagtgaacct |
10525526 |
T |
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