View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14933_low_1 (Length: 802)
Name: NF14933_low_1
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_1 |
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| [»] scaffold0276 (2 HSPs) |
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Alignment Details
Target: scaffold0276 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: scaffold0276
Description:
Target: scaffold0276; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 426
Target Start/End: Original strand, 5565 - 5977
Alignment:
| Q |
18 |
aattttatgtagtgacttatttatagctaggaatctagaatattgattttctgtttctccgtttgactttttgtgccagaatattcgataaattttcatt |
117 |
Q |
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| T |
5565 |
aattttatgtagtgacttatttatagctaggaatctagaatattgattttctgtttctccgtttgactttttgtgccagaatattcgataaattttcatt |
5664 |
T |
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| Q |
118 |
ta------tttttatttctttcagcacctgtttcttacactcactgttttaggtggaaaattaaatatgtaaaatcataggttttcaattaattaagttg |
211 |
Q |
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| T |
5665 |
tatttttatttttatttctttcagcacctgtttcttacactcactgttttagctggaatattaaatatgtaaaatcataggttttcaattaattaagttg |
5764 |
T |
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| Q |
212 |
atattgaaacatttgatgatttgggtgtttgtctacttccggtttcaatgctggtgcaggatatgtcatttttgcttctatggaagnnnnnnnnnnnnnn |
311 |
Q |
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| T |
5765 |
atattgaaacatttgatgatttgggtgtttgtctacttccggtttcaatgctggtgcaggatatatcatttttgcttctatggaagttttttgtttttgt |
5864 |
T |
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| Q |
312 |
nnnnngtgttaaatagttgtctattgacgtattttgaacatagtttgtgataaatagttgtctgttgatgtaatttgaacataatctgggcatatagcat |
411 |
Q |
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| T |
5865 |
tttttgtgtt--atagttgtctattgacgtattttgaacatagtttgtgataaatagttgtctgttgatgtaatttgaacataatctgggcatatagcat |
5962 |
T |
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| Q |
412 |
agaaattgattgtga |
426 |
Q |
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| T |
5963 |
tgaaattgattgtga |
5977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0276; HSP #2
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 471 - 792
Target Start/End: Original strand, 6022 - 6343
Alignment:
| Q |
471 |
acaatgtaagtaattgtcatttttgttgttgtacttttggacatatagagtctagtgatgggttggtgtgtgtatatgatgatgttgtgctgaatactaa |
570 |
Q |
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| T |
6022 |
acaatgtaaataatggtcatttttgttgttgtacttttggacatatagagtctagtgatgggtcggtgtgtatatatgatgatgttgtgctgaatactaa |
6121 |
T |
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| Q |
571 |
tccaatatgttgcatatgtgcagttttgaagtggttttcttgcttgaggttgccttgttgatctgttagactattgttataatttaccgagcatggataa |
670 |
Q |
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| T |
6122 |
tccaatatgttgcatatgtgcagttttgaagtggttttcttgcttgaggttgacttgttgatctgttagactattgttataatttaccgagcatggataa |
6221 |
T |
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| Q |
671 |
agtttcatcagactgtccatacccaggatgcttcttttgtgtcatgaaggaagcgaatccaagcaaacgcagagcaagtgtattgaagttctttagagaa |
770 |
Q |
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| T |
6222 |
agtttcatcagactgtccatacccaggatgcttcttttgtgtcatgaaggaagcgaatccaagcaaacgcagagcaagtgtattgaagttctttagagaa |
6321 |
T |
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| Q |
771 |
cttccgtgtcaagatgatgatg |
792 |
Q |
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| T |
6322 |
cttccgtgtcaagatgatgatg |
6343 |
T |
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Back To:
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