View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14933_low_13 (Length: 297)
Name: NF14933_low_13
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 8854144 - 8854427
Alignment:
| Q |
1 |
cataattctaggtcattaataaacattaagaaaggnnnnnnnnnncctccattacaatttctaacaacctatgaatcatacagcttcttgaagattctta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8854144 |
cataattctaggtcattaataaacattaagaaaggaaaaaaaaaac-tccattacaatttctaacaacctatgaatcatacagcttcttgaagattctta |
8854242 |
T |
|
| Q |
101 |
acaaactcaggtagctcagttgagtcaacttctgttggggcatctcctgttgccattaccataacatcacgagcaatctttcgatctgaaaaacataaaa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8854243 |
acaaactcaggtagttcagttgagtcaacttctgttggtgcatctcctgttgccattaccataacatcacgagcaatctttcgatctgaaaaacataaaa |
8854342 |
T |
|
| Q |
201 |
cataaatattaactttc----ttcctaggtaatatcaagccctagaagaagtaagcaatatagatggaggtaatttggagattga |
281 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8854343 |
cataaatattaactttcttcattcctaggtaatatcaagccctagaagaagtaagcaatatagatggaggtaatttggagattga |
8854427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University