View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14933_low_3 (Length: 563)
Name: NF14933_low_3
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 289
Target Start/End: Complemental strand, 8823793 - 8823521
Alignment:
| Q |
19 |
ttgggtgtatccaacaggtatggaatattaatgatcttagttgcatctacatgccctttctcaaactcttccaccgtcctacaaatcaccaaaaggttta |
118 |
Q |
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| T |
8823793 |
ttgggtgtatccaacaggtatggaatattaatgatcttagttgcatctacatgccctttctcaaactcttccaccgtcctacaaatcaccaaaagattta |
8823694 |
T |
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| Q |
119 |
gatttagctttgaattcaatatgtttttagtctttaattaactagaattttgttttaatctatatgcca--nnnnnnnnatataaaaacatgcagttttt |
216 |
Q |
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| T |
8823693 |
gatttagctttgaattcaatatgtttttagtctttaattaactagaattttgttttaatctatatgccatttttttattatataaaaacatgcagttttt |
8823594 |
T |
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| Q |
217 |
aattctttatccaaagggaagaaagacaggaaagcgtctcatctaatttgactaaccacgatatgatatattt |
289 |
Q |
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| T |
8823593 |
aattctttatccaaagggaagaaagacaagaaagtgtctcatctaatttgactaactacgatatgatatattt |
8823521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 337 - 429
Target Start/End: Complemental strand, 8823517 - 8823425
Alignment:
| Q |
337 |
ttagaggtggtggaccatatcaaatctttatctacgggaaagttgtgataaagagattattttctcgatttgttgattcttttgtttgtttat |
429 |
Q |
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| T |
8823517 |
ttagaggtggtggaccgtatcaaatctttatctacgggaaagttgtgataaagagatcattttctcgatttgttgattcttttgtttgtttat |
8823425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 475 - 558
Target Start/End: Complemental strand, 8823379 - 8823296
Alignment:
| Q |
475 |
taggtttacctaacatcaagataaatgtgaccggtctggatgagattcttggctgcgtgtacatcaatagtgacaacctttgct |
558 |
Q |
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| T |
8823379 |
taggtttacctaacatcaagataaatgtgaccggtctggatgagattcttggctgcgtgtacatcaatggtgacaacctttgct |
8823296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 21 - 104
Target Start/End: Original strand, 31897397 - 31897480
Alignment:
| Q |
21 |
gggtgtatccaacaggtatggaatattaatgatcttagttgcatctacatgccctttctcaaactcttccaccgtcctacaaat |
104 |
Q |
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| T |
31897397 |
gggtgtattgaacatgtatgcaatgttaatgatcttctctgaatctacgtgccctttctgaaactcttccaccgtcctataaat |
31897480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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