View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14933_low_4 (Length: 522)
Name: NF14933_low_4
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 10 - 519
Target Start/End: Original strand, 55689967 - 55690485
Alignment:
| Q |
10 |
tcaaaagattgtatttaatacaaacaaaaacttttannnnnnnnaaaaggagacatggataagggaatgtatcttgcttccacttaggccaaactttctg |
109 |
Q |
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| T |
55689967 |
tcaaaagattgtatttaatacaaacaaaaacttttattttttttaaaaggagacatggataagtgaatgtatcttgcttccacttaggctaaactttctg |
55690066 |
T |
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| Q |
110 |
agtatatgtctattttagatagttctactcctttctagttttcatcactgaggttatctttggtgtactacgatgaaccagtgttaactttggaaataat |
209 |
Q |
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| T |
55690067 |
agtatatgtctattttagatagttctgctcctttctagttttcatcac-gaggttatctttggtgtactacga---accagtgttaactttggaaataat |
55690162 |
T |
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| Q |
210 |
aaagaagctataagaaataaatctcttccatgatagcttcatgggaagactgtgtctctgtgcatttataactgcgggtacctaaacattgtctggtgat |
309 |
Q |
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| T |
55690163 |
aaagaagctataagaaataaatctcttccatgatagcttcatgggaagactgtgtctttgtgcatttataactgcaggtaccaaaacattgtctggtgat |
55690262 |
T |
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| Q |
310 |
atctatgttgctcaaaagtcagttttcccttcatcgagtgaatttcaagttaaaagatatggaatgtca--------------aattgctgtgaaagtcg |
395 |
Q |
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| T |
55690263 |
atctatgttgctcaaaagtcagttttccctatatcgagtgaatttcaagtttaaatatatggaatgtcattatatttttttctaattgctgtgaaagtcg |
55690362 |
T |
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| Q |
396 |
cttcccttatgggagttatccccgcttatttttgaaggcctttgtctgtctggaggattcattttttctgtttgtcaaacaacattcaatgaaagaaaaa |
495 |
Q |
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||||||| |||| |||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
55690363 |
cttccctcatggaagttatcccctctcatttttgaaggcctttgtctgtctgga-gattcattttttctgtttgtcaaacaacattcaatgaaagagaaa |
55690461 |
T |
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| Q |
496 |
gttcatatattttgtaaatattga |
519 |
Q |
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| T |
55690462 |
gtttatatatttcgtaaatattga |
55690485 |
T |
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