View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14933_low_6 (Length: 483)
Name: NF14933_low_6
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 1 - 468
Target Start/End: Complemental strand, 17897610 - 17897143
Alignment:
| Q |
1 |
cggaccaatataccccggtgtaccttcctctcccaccgccggcacagccgtcaacgtatgaccacacctcggccccggtccatcttccttcttctccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17897610 |
cggaccaatataccccggtgtaccttcctctcccaccgccggcacagccgtcaacgtatgaccacacctcggccccggtccatcttccttcttctccaaa |
17897511 |
T |
|
| Q |
101 |
atcgcatccacaactgtatagctcggcgcgagtcttggtccaacaaccgaactatgctgaacctgaccagccgcagcaccttgttgctgtgattgttgct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
17897510 |
atcgcatccacaactgtatagctcggcgcgagtcttggtccaacaaccgaactatgctgcacctgaccagccgcagcaccttgttgctgtgattgttgct |
17897411 |
T |
|
| Q |
201 |
ccgccggagatccaccggaagacaacggtgccggcgccggaatcgaattccctcctaactgttctccctcttcaattttcgccaactttgagtcgttatc |
300 |
Q |
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||||||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
17897410 |
ccgccggagatccaccggacgacgacggcgacggcgccggaatcgaattccctcctaactgttctccctcttcaattttcgccacctttgagtcgttatc |
17897311 |
T |
|
| Q |
301 |
attctctgacgccatcgatgagtcaacatccattgtttaaccctaagatcggagctaaaattgttgcgaaattcgaagtaacatttcgattcggttgaag |
400 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17897310 |
attctccgacgccatcgatgagtcaacatccattgtttaaccctaagatcggagctaaaattgttgcgaaattcgaagtaacatttcgattcggttgaag |
17897211 |
T |
|
| Q |
401 |
aaattttcaacacaaagcaaaattgaaaaccctaactcagatcctaaattcttcaattcagatagaag |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17897210 |
aaattttcaacacaaagcaaaattgaaaaccctaactcagatcctaaattcttcaattcagatagaag |
17897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36835287 - 36835406
Alignment:
| Q |
1 |
cggaccaatataccccggtgtaccttcctctcccaccgccggcacagccgtcaacgtatgaccacacctcggccccggtccatcttccttcttctccaaa |
100 |
Q |
| |
|
|||||||||||||||||| || |||||||| || ||||||| ||| |||||||||||||| |||||||||||||| |||||||| ||||||||||||||| |
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| T |
36835287 |
cggaccaatataccccggcgtcccttcctccccaaccgccgccaccgccgtcaacgtatgtccacacctcggcccaggtccatcctccttcttctccaaa |
36835386 |
T |
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| Q |
101 |
atcgcatccacaactgtata |
120 |
Q |
| |
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||||||| ||||| ||||| |
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| T |
36835387 |
atcgcatttacaaccgtata |
36835406 |
T |
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