View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14933_low_7 (Length: 366)

Name: NF14933_low_7
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14933_low_7
NF14933_low_7
[»] scaffold0159 (2 HSPs)
scaffold0159 (37-366)||(27418-27743)
scaffold0159 (37-366)||(35549-35874)
[»] chr2 (4 HSPs)
chr2 (37-366)||(5782086-5782411)
chr2 (37-162)||(5826634-5826759)
chr2 (174-206)||(5827393-5827425)
chr2 (141-178)||(37045968-37046005)
[»] chr6 (8 HSPs)
chr6 (222-366)||(21392078-21392223)
chr6 (223-366)||(18765159-18765303)
chr6 (221-361)||(31570374-31570516)
chr6 (221-366)||(18784724-18784870)
chr6 (223-366)||(20024634-20024778)
chr6 (248-365)||(14602358-14602472)
chr6 (255-365)||(23159793-23159904)
chr6 (1-35)||(9126638-9126672)
[»] chr7 (2 HSPs)
chr7 (221-365)||(1967342-1967487)
chr7 (244-365)||(39702023-39702142)
[»] chr3 (2 HSPs)
chr3 (247-365)||(6507034-6507153)
chr3 (1-37)||(14904458-14904494)
[»] chr5 (2 HSPs)
chr5 (221-365)||(32725557-32725702)
chr5 (277-365)||(35329917-35330006)
[»] chr8 (2 HSPs)
chr8 (221-365)||(16046193-16046339)
chr8 (277-365)||(44968149-44968238)
[»] chr4 (2 HSPs)
chr4 (220-365)||(50378306-50378452)
chr4 (258-322)||(8370298-8370362)
[»] chr1 (2 HSPs)
chr1 (221-365)||(15722159-15722304)
chr1 (244-365)||(7486302-7486421)
[»] scaffold0214 (1 HSPs)
scaffold0214 (221-365)||(1060-1203)


Alignment Details
Target: scaffold0159 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 37 - 366
Target Start/End: Original strand, 27418 - 27743
Alignment:
Q  37 aaattttcaaaggtttgtgtcttagcatcccagctggaaatgtaataaattaataactactttagtacatctcataattgtacaaagagaaattannnnn 136  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||||| ||||| |||||||||||||         
T  27418 aaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatttaataattactttagtaaatctcatcattgtgcaaagagaaattattttt 27517  T
Q  137 nnaacaatcaaatttagacaacttttgcgacaacattttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 236  Q
      ||||| ||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27518 ttaacaacca----tagacaacttttgcgacaactttttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 27613  T
Q  237 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcaactacatg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  27614 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcatttacatg 27713  T
Q  337 gaagtaattagtatcatgcaaagtttatat 366  Q
    |||||||||| |||||||||||||||||||    
T  27714 gaagtaattaatatcatgcaaagtttatat 27743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 37 - 366
Target Start/End: Original strand, 35549 - 35874
Alignment:
Q  37 aaattttcaaaggtttgtgtcttagcatcccagctggaaatgtaataaattaataactactttagtacatctcataattgtacaaagagaaattannnnn 136  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||||| ||||| |||||||||||||         
T  35549 aaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatttaataattactttagtaaatctcatcattgtgcaaagagaaattattttt 35648  T
Q  137 nnaacaatcaaatttagacaacttttgcgacaacattttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 236  Q
      ||||| ||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35649 ttaacaacca----tagacaacttttgcgacaactttttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 35744  T
Q  237 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcaactacatg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  35745 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcatttacatg 35844  T
Q  337 gaagtaattagtatcatgcaaagtttatat 366  Q
    |||||||||| |||||||||||||||||||    
T  35845 gaagtaattaatatcatgcaaagtttatat 35874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 37 - 366
Target Start/End: Original strand, 5782086 - 5782411
Alignment:
Q  37 aaattttcaaaggtttgtgtcttagcatcccagctggaaatgtaataaattaataactactttagtacatctcataattgtacaaagagaaattannnnn 136  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||||| ||||| |||||||||||||         
T  5782086 aaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatttaataattactttagtaaatctcatcattgtgcaaagagaaattattttt 5782185  T
Q  137 nnaacaatcaaatttagacaacttttgcgacaacattttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 236  Q
      ||||| ||    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5782186 ttaacaacca----tagacaacttttgcgacaactttttaaaggtgctgatattatcgctgtagtgaaaatggagtgatataagtgatttaaatatattt 5782281  T
Q  237 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcaactacatg 336  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  5782282 ttcttctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcatttacatg 5782381  T
Q  337 gaagtaattagtatcatgcaaagtttatat 366  Q
    |||||||||| |||||||||||||||||||    
T  5782382 gaagtaattaatatcatgcaaagtttatat 5782411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 37 - 162
Target Start/End: Original strand, 5826634 - 5826759
Alignment:
Q  37 aaattttcaaaggtttgtgtcttagcatcccagctggaaatgtaataaattaataactactttagtacatctcataattgtacaaagagaaattannnnn 136  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||| | ||||||| |||||||||| ||||||| ||||| |||||||||||||         
T  5826634 aaatattcaaagatttgtgtcttagcatcccagctggaaaggtaatcatttaataattactttagtaaatctcatcattgtgcaaagagaaattattttt 5826733  T
Q  137 nnaacaatcaaatttagacaactttt 162  Q
      ||||| ||||||||||||||||||    
T  5826734 ttaacaaccaaatttagacaactttt 5826759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 5827393 - 5827425
Alignment:
Q  174 ttaaaggtgctgatattatcgctgtagtgaaaa 206  Q
    |||||||||||||||||||||||||||||||||    
T  5827393 ttaaaggtgctgatattatcgctgtagtgaaaa 5827425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 37045968 - 37046005
Alignment:
Q  141 caatcaaatttagacaacttttgcgacaacattttaaa 178  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  37045968 caatcaaatttagacaacttttgcgaaaactttttaaa 37046005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 222 - 366
Target Start/End: Original strand, 21392078 - 21392223
Alignment:
Q  222 gatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttctt 320  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | ||||||||| |||||||||||    
T  21392078 gatttaaatatatttttctttctgattttgttgatcattttggattaaaggccaaatgatgaagttgatttaacgatacaagttgagaaaactgcttctt 21392177  T
Q  321 ctaattcaactacatggaagtaattagtatcatgcaaagtttatat 366  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21392178 ctaattcaattacatagaagtaattagtatcatgcaaagtttatat 21392223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 18765159 - 18765303
Alignment:
Q  223 atttaaatatatttttcttct-gattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttc 321  Q
    ||||||||||||||||||| | ||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||||||    
T  18765159 atttaaatatatttttcttttagattttgatgatcattttggattaaaggccaagtgatgaagttgttttaacgatataagatgagagaaccgcttcttc 18765258  T
Q  322 taattcaactacatggaagtaattagtatcatgcaaagtttatat 366  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  18765259 taattcaattacatggaagtaattagtatcatgcaaagtttatat 18765303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 221 - 361
Target Start/End: Complemental strand, 31570516 - 31570374
Alignment:
Q  221 tgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttc 318  Q
    ||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| |||||    
T  31570516 tgatttaaatatatttttctttcagattttgttgatcattttggattaaaggccaagtgatgaagttgatttaacgaatataattcgagagaaccgcttc 31570417  T
Q  319 ttctaattcaactacatggaagtaattagtatcatgcaaagtt 361  Q
    |||||| |||| |||||||||||||||||||||||||||||||    
T  31570416 ttctaactcaattacatggaagtaattagtatcatgcaaagtt 31570374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 221 - 366
Target Start/End: Original strand, 18784724 - 18784870
Alignment:
Q  221 tgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttct 319  Q
    ||||||||||||||||||||| |  ||||||||||||||||| ||||||||  || ||||||||||||||||||||| ||||||||||||| ||||||||    
T  18784724 tgatttaaatatatttttctttcaaattttgttgatcattttggattaaagctcaggtgatgaagttgatttaacgatataagttgagagagctgcttct 18784823  T
Q  320 tctaattcaactacatggaagtaattagtatcatgcaaagtttatat 366  Q
    ||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  18784824 tctgattcaattacatggaaataattagtatcatgcaaagtttatat 18784870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 223 - 366
Target Start/End: Original strand, 20024634 - 20024778
Alignment:
Q  223 atttaaatatatttttcttct-gattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttc 321  Q
    ||||||||||||||||||  | ||||||| |||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||  ||||||||    
T  20024634 atttaaatatatttttctcttagattttgatgatcattttggattaaaggccaagtgatgaagttgttttaacgatataagatgagagaaacgcttcttc 20024733  T
Q  322 taattcaactacatggaagtaattagtatcatgcaaagtttatat 366  Q
     ||| ||| |||||||||||||||||||||||| || ||||||||    
T  20024734 aaatacaattacatggaagtaattagtatcatggaatgtttatat 20024778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 248 - 365
Target Start/End: Original strand, 14602358 - 14602472
Alignment:
Q  248 ttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttctaattcaactacatggaagtaattag 347  Q
    |||||||||||||| |||||||||||||||||   |||||||||||| | ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  14602358 ttgttgatcattttggattaaaggccaagtga---agttgatttaacaatataagttgagagaactgcttcttctaatttaattacatggaattaattag 14602454  T
Q  348 tatcatgcaaagtttata 365  Q
    ||||||||||||||||||    
T  14602455 tatcatgcaaagtttata 14602472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 255 - 365
Target Start/End: Original strand, 23159793 - 23159904
Alignment:
Q  255 tcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagtaattagtatcat 353  Q
    ||||||| |||||||||||||||||| |||||||||||||||| |||| |||||||||| | ||||||||| |||| |||||||||||||||||||||||    
T  23159793 tcattttggattaaaggccaagtgataaagttgatttaacgaatataatttgagagaaccgtttcttctaactcaattacatggaagtaattagtatcat 23159892  T
Q  354 gcaaagtttata 365  Q
    ||||||||||||    
T  23159893 gcaaagtttata 23159904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 9126672 - 9126638
Alignment:
Q  1 tggactcctatctttccaaaagtgcaattaaacct 35  Q
    ||||| |||||||||||||||||||||||||||||    
T  9126672 tggacccctatctttccaaaagtgcaattaaacct 9126638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 221 - 365
Target Start/End: Complemental strand, 1967487 - 1967342
Alignment:
Q  221 tgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttct 319  Q
    ||||||||||| ||||||||| |||||||||||| |||||||  ||||||||||| ||||| ||||||||||||||| ||||||||||| |||| |||||    
T  1967487 tgatttaaataaatttttctttctgattttgttgttcattttgaattaaaggccaggtgattaagttgatttaacgatataagttgagaaaactacttct 1967388  T
Q  320 tctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    || ||||||| ||||||||||||||||||||| |||||||||||||    
T  1967387 tcaaattcaattacatggaagtaattagtatcttgcaaagtttata 1967342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 39702023 - 39702142
Alignment:
Q  244 gattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagta 342  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||  |||| ||||||||   |    
T  39702023 gattttgttgatcattttggattaaaggccaagtgatgaagttgatttaacgaatataattcgagagaaccgcttcttctatctcaattacatgga---a 39702119  T
Q  343 attagtatcatgcaaagtttata 365  Q
    |||||||||||||||||||||||    
T  39702120 attagtatcatgcaaagtttata 39702142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 247 - 365
Target Start/End: Complemental strand, 6507153 - 6507034
Alignment:
Q  247 tttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagtaatt 345  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| |||| |||||||||||||||    
T  6507153 tttgttgatcattttggattaaaagccaagtgatgaagttgatttaacgaatataacttgagagaaccgcttcttctaactcaattacatggaagtaatt 6507054  T
Q  346 agtatcatgcaaagtttata 365  Q
    ||||||||||||||||||||    
T  6507053 agtatcatgcaaagtttata 6507034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14904458 - 14904494
Alignment:
Q  1 tggactcctatctttccaaaagtgcaattaaacctta 37  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  14904458 tggacccctatctttccaaaagtgcaattaagcctta 14904494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 32725557 - 32725702
Alignment:
Q  221 tgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttct 319  Q
    |||||||||| |||||| ||| | |||||||||||||||||| |||||| |  ||||||||||| |||||||||||| ||||||||||| ||||||||||    
T  32725557 tgatttaaatttattttactttcagattttgttgatcattttggattaacgatcaagtgatgaatttgatttaacgacataagttgagacaactgcttct 32725656  T
Q  320 tctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||    
T  32725657 tctaattcaattacatggaagtaattggtatcatacaaagtttata 32725702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 365
Target Start/End: Complemental strand, 35330006 - 35329917
Alignment:
Q  277 tgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| ||||||||||    
T  35330006 tgatgaagttgatttaacgaatataagttgagagaaccgcttcttctaattcaattacatgtatgtaattagtatcatgtaaagtttata 35329917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 16046193 - 16046339
Alignment:
Q  221 tgatttaaatatatttttcttctga-ttttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttc 318  Q
    |||||||||||||||||||||   | |||||||||||||||| |||||||||||| ||||| ||| |||||||||||| |||| || |||||||||||||    
T  16046193 tgatttaaatatatttttctttcaagttttgttgatcattttggattaaaggccaggtgataaagctgatttaacgaatataattttagagaactgcttc 16046292  T
Q  319 ttctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    |||||| |||| || |||||||||||||||||| |||||||||||||    
T  16046293 ttctaactcaattatatggaagtaattagtatcttgcaaagtttata 16046339  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 277 - 365
Target Start/End: Complemental strand, 44968238 - 44968149
Alignment:
Q  277 tgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| | ||||||||||||||| ||||||||||    
T  44968238 tgatgaagttgatttaacgaatataagttgagagaaccgcttcttctaattcaattacatgtatgtaattagtatcatgtaaagtttata 44968149  T

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Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 220 - 365
Target Start/End: Complemental strand, 50378452 - 50378306
Alignment:
Q  220 gtgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttc 318  Q
    ||||||||||||  |||||||| | ||||||||||||||||||  | ||||||||| ||||| ||||||||||||||| ||||||||||| |||| ||||    
T  50378452 gtgatttaaataattttttctttcagattttgttgatcattttgaagtaaaggccaggtgattaagttgatttaacgatataagttgagaaaactacttc 50378353  T
Q  319 ttctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    ||| ||||||| ||||| ||||||||||||||| |||||||||||||    
T  50378352 ttcaaattcaattacatagaagtaattagtatcttgcaaagtttata 50378306  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 322
Target Start/End: Original strand, 8370298 - 8370362
Alignment:
Q  258 ttttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttcttct 322  Q
    |||| ||||||||||||||||||||||||| |||||||| | |||||||||||| ||||||||||    
T  8370298 ttttcgattaaaggccaagtgatgaagttggtttaacgatacaagttgagagaagtgcttcttct 8370362  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 15722159 - 15722304
Alignment:
Q  221 tgatttaaatatatttttctt-ctgattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaaataagttgagagaactgcttct 319  Q
    ||||||||||| ||||||||| |  ||||| |||||||||||  ||||||||| | ||||| ||||||||||||||| ||||||||||| |||| |||||    
T  15722159 tgatttaaataaatttttctttcaaatttttttgatcattttgaattaaaggctaggtgattaagttgatttaacgatataagttgagaaaactacttct 15722258  T
Q  320 tctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    || ||||||| ||||||||||||||||||||| |||||||||||||    
T  15722259 tcaaattcaattacatggaagtaattagtatcttgcaaagtttata 15722304  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 244 - 365
Target Start/End: Original strand, 7486302 - 7486421
Alignment:
Q  244 gattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttcttctaattcaactacatggaagta 342  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||||  |||| ||||||||   |    
T  7486302 gattttgttgatcattttggattaaaggccaagtgatgaagttgatttaacgaatataattcgagagaaccgcttcttctatctcaattacatgga---a 7486398  T
Q  343 attagtatcatgcaaagtttata 365  Q
    |||||||||||||||||||||||    
T  7486399 attagtatcatgcaaagtttata 7486421  T

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Target: scaffold0214 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 221 - 365
Target Start/End: Original strand, 1060 - 1203
Alignment:
Q  221 tgatttaaatatatttttcttct-gattttgttgatcattttagattaaaggccaagtgatgaagttgatttaacgaa-ataagttgagagaactgcttc 318  Q
    ||||||||||||||||||||| | ||| |||||||||||||| ||||||||||   ||||||||||||||||||| ||  ||| |  ||||||| |||||    
T  1060 tgatttaaatatatttttcttttagatgttgttgatcattttggattaaaggcagtgtgatgaagttgatttaacaaatctaattcaagagaaccgcttc 1159  T
Q  319 ttctaattcaactacatggaagtaattagtatcatgcaaagtttata 365  Q
    |||||  |||| ||||||||   ||||||||||||||||||||||||    
T  1160 ttctatctcaattacatgga---aattagtatcatgcaaagtttata 1203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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