View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14933_low_8 (Length: 364)
Name: NF14933_low_8
Description: NF14933
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14933_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 7425955 - 7425618
Alignment:
| Q |
19 |
ggtcccaatacggcccatattggcaacaagctcgtaaaatgtgtctactagaactgtttagtgtaaaacgcctcgagtcttatgagtacatgagaaaaca |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
7425955 |
ggtcccaatatggcccatattggcaacaagctcgtaaaatgtgtctgctagaactgtttagtgtaaaacgccttgagtcttatgagtacatgagaaaaca |
7425856 |
T |
|
| Q |
119 |
agagttacatgctttcttgcacgaactatttaactcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425855 |
agagttacatgctttcttgcacgaactatttaattcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgc |
7425756 |
T |
|
| Q |
219 |
atggttttggggaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatgggg |
318 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7425755 |
atggttttgggcaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatgggg |
7425656 |
T |
|
| Q |
319 |
tcttcaatattggggattttattccttggattcatttc |
356 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7425655 |
tcctcaatgttggggattttattccttggattcatttc |
7425618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 26 - 352
Target Start/End: Complemental strand, 7431937 - 7431611
Alignment:
| Q |
26 |
atacggcccatattggcaacaagctcgtaaaatgtgtctactagaactgtttagtgtaaaacgcctcgagtcttatgagtacatgagaaaacaagagtta |
125 |
Q |
| |
|
|||||| ||||||| |||||||| |||||||||| || | ||| |||||||||||||| | ||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
7431937 |
atacggtccatattttcaacaagcccgtaaaatgtttcaaagggaattgtttagtgtaaaaagtctcgagtcttatgagtacatgagaaaagaagaatta |
7431838 |
T |
|
| Q |
126 |
catgctttcttgcacgaactatttaactcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggttt |
225 |
Q |
| |
|
||| ||| |||| |||| || || |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||| | |
|
|
| T |
7431837 |
catatttttctgcataaactcttcaattcaaaaaataaaactattttgttgaaggaccatctttcaacttttagtcttaatattataagccgcatggtgt |
7431738 |
T |
|
| Q |
226 |
tggggaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatggggtcttcaa |
325 |
Q |
| |
|
||||||| || || ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
7431737 |
tggggaagaaatacttggagaagagtgaaaatgttattatttcccctgaagagtttaaggagatgttggatgagttgtttttgcttaatggggtcttcaa |
7431638 |
T |
|
| Q |
326 |
tattggggattttattccttggattca |
352 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
7431637 |
tattggggattttattccttggattca |
7431611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 7416969 - 7416632
Alignment:
| Q |
19 |
ggtcccaatacggcccatattggcaacaagctcgtaaaatgtgtctactagaactgtttagtgtaaaacgcctcgagtcttatgagtacatgagaaaaca |
118 |
Q |
| |
|
|||| ||||| || |||||||||| |||||||||| |||||||||| | || ||||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
7416969 |
ggtctcaatatggtccatattggcgtcaagctcgtagaatgtgtctattggagttgtttagtgcaaaacgcctcgagtcttacgagtacataagaaaaca |
7416870 |
T |
|
| Q |
119 |
agagttacatgctttcttgcacgaactatttaactcaaaaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgc |
218 |
Q |
| |
|
|||| | |||| ||| ||||| |||| || || ||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7416869 |
agagatgcatgattttttgcataaacttttcaattcaaaaaacaaaacaattttggtgaaagaccatctttcaactttgagtctaaatgttataagtcga |
7416770 |
T |
|
| Q |
219 |
atggttttggggaaaaagtatttggagaagagtgaaaatgctattatttcccctgaagagtttaagaagatgttagatgaattgtttttgcttaatgggg |
318 |
Q |
| |
|
||||| | ||||||||||| ||||| |||| ||| ||||| ||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||| |
|
|
| T |
7416769 |
atggtgctagggaaaaagtacttggaaaagactgataatgcagttatttcccctgatgagtttaagaagatgttggatgagttgtttttacttaatggaa |
7416670 |
T |
|
| Q |
319 |
tcttcaatattggggattttattccttggattcatttc |
356 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
7416669 |
ttctcaatattggggattttattccttggattcatttc |
7416632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 223
Target Start/End: Original strand, 7429973 - 7430039
Alignment:
| Q |
157 |
aaaacaaaacaattttgttgaaggaccatctttcaactttgagtctcaatgttataagtcgcatggt |
223 |
Q |
| |
|
|||| ||||| |||| ||| |||||||||||||||||||| ||| ||||| |||| ||||||||||| |
|
|
| T |
7429973 |
aaaataaaactatttcgttaaaggaccatctttcaacttttagtttcaatattattagtcgcatggt |
7430039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University