View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_high_13 (Length: 333)
Name: NF14934_high_13
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 308; Significance: 1e-173; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 41702768 - 41703083
Alignment:
| Q |
1 |
attatgaagctctcttgaaagaggttaaggtaaatagaaaaagtaatgaagcgttagaaaagaagaacaatgaagttgatgtgttaagaagaaagattgt |
100 |
Q |
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| T |
41702768 |
attatgaagctctcttgaaagaggttaaggtaaatagaaaaagtaatgaagcgttagaaaagaagaacaatgaagttgatgtgttaagaagaaagattgt |
41702867 |
T |
|
| Q |
101 |
tgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgggaggaagatgatattgaattgggtgtgttaagaaaaatgattggtgaatca |
200 |
Q |
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| T |
41702868 |
tgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgggaggaagatgatattgaattgggtgtgttaagaaaaatgattggtgaatta |
41702967 |
T |
|
| Q |
201 |
cagattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcg |
300 |
Q |
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| T |
41702968 |
cagagtaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcg |
41703067 |
T |
|
| Q |
301 |
aagtggagatattact |
316 |
Q |
| |
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|||||||||||||||| |
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| T |
41703068 |
aagtggagatattact |
41703083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 41469785 - 41469655
Alignment:
| Q |
68 |
caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgggaggaagatgatattgaa |
167 |
Q |
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| T |
41469785 |
caatgaagttgatgtaataagaacaaagattgttgaattagaggatgaagttttagagttaaacaagattaagaaaaaatgggaggaagatgacattgaa |
41469686 |
T |
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| Q |
168 |
ttgggtgtgttaagaaaaatgattggtgaat |
198 |
Q |
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||||||| |||||||||||| |||||||| |
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| T |
41469685 |
ttgggtgaattaagaaaaatgtctggtgaat |
41469655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 202 - 316
Target Start/End: Complemental strand, 41469579 - 41469465
Alignment:
| Q |
202 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaacgatgaatgagttgaggaatgaaagcaggaaattgacagaggagaagtgcga |
301 |
Q |
| |
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||||||||| || |||||| ||||||||| |||||||||||||| || ||||| ||| |||||| ||||||||||||||||| ||||||||||| |||| |
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| T |
41469579 |
agattaaaaatgatgaattgaaggaaacagcaaagaagaatttggtaatgatgagtgacttgaggcatgaaagcaggaaattggcagaggagaagcgcga |
41469480 |
T |
|
| Q |
302 |
agtggagatattact |
316 |
Q |
| |
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|| |||| |||||| |
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| T |
41469479 |
agccgagacattact |
41469465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 139
Target Start/End: Complemental strand, 41499699 - 41499628
Alignment:
| Q |
68 |
caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaa |
139 |
Q |
| |
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||||||||||| ||||||||||| |||||||||||||||||| |||| |||||||||||| ||| ||||| |
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| T |
41499699 |
caatgaagttggtgtgttaagaacaaagattgttgaattagaatctgaaattttggagttgaggaaattaaa |
41499628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 69 - 130
Target Start/End: Complemental strand, 41509462 - 41509401
Alignment:
| Q |
69 |
aatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaa |
130 |
Q |
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| T |
41509462 |
aatgaacttgatatgttaagaaaaaagaaggttgaattagacaatgaagttttggagttgaa |
41509401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 41499605 - 41499525
Alignment:
| Q |
69 |
aatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagttaaagaaaaaatgg |
149 |
Q |
| |
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|||||| ||| |||| ||||| || ||||| | |||||||| |||||||||||||||||| |||||| |||||||||||| |
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| T |
41499605 |
aatgaacttgttgtgctaagagaaatgattggtaaattagagcatgaagttttggagttgaggaagttgaagaaaaaatgg |
41499525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 41515508 - 41515440
Alignment:
| Q |
68 |
caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaagaagtt |
136 |
Q |
| |
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||||||| || |||||||||||||||||| || |||||||||| |||| |||||||||||| |||||| |
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| T |
41515508 |
caatgaaatttatgtgttaagaagaaagaatggtgaattagagtctgaaattttggagttgaggaagtt |
41515440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 41519686 - 41519624
Alignment:
| Q |
68 |
caatgaagttgatgtgttaagaagaaagattgttgaattagagaatgaagttttggagttgaa |
130 |
Q |
| |
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||||||| ||||| ||||||||| ||||| | ||||||||| |||||||||||||||||||| |
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| T |
41519686 |
caatgaacttgatatgttaagaaaaaagaagggtgaattagacaatgaagttttggagttgaa |
41519624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 74
Target Start/End: Complemental strand, 41469873 - 41469833
Alignment:
| Q |
34 |
atagaaaaagtaatgaagcgttagaaaagaagaacaatgaa |
74 |
Q |
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||||||||| ||||| || |||||||||||||||||||||| |
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| T |
41469873 |
atagaaaaactaatgtagagttagaaaagaagaacaatgaa |
41469833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 41469917 - 41469881
Alignment:
| Q |
2 |
ttatgaagctctcttgaaagaggttaaggtaaataga |
38 |
Q |
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|||||||||||| |||||||| ||||||||||||||| |
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| T |
41469917 |
ttatgaagctcttttgaaagaagttaaggtaaataga |
41469881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 250
Target Start/End: Complemental strand, 41547604 - 41547556
Alignment:
| Q |
202 |
agattaaaattggagaattggaggaaacagtaaagaagaatttggcaac |
250 |
Q |
| |
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||||||||| ||| |||||| | ||||||||||| |||||||||||||| |
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| T |
41547604 |
agattaaaaatggtgaattgaatgaaacagtaaacaagaatttggcaac |
41547556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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