View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_high_18 (Length: 286)

Name: NF14934_high_18
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_high_18
NF14934_high_18
[»] chr7 (19 HSPs)
chr7 (5-286)||(22063378-22063659)
chr7 (6-286)||(22069848-22070128)
chr7 (5-178)||(22088329-22088502)
chr7 (51-286)||(22080650-22080885)
chr7 (174-286)||(22100398-22100510)
chr7 (108-272)||(6864873-6865037)
chr7 (120-282)||(20351946-20352108)
chr7 (108-282)||(20374560-20374734)
chr7 (93-282)||(20338748-20338937)
chr7 (108-275)||(20361266-20361433)
chr7 (184-284)||(660902-661002)
chr7 (110-159)||(16839561-16839610)
chr7 (120-197)||(20126330-20126407)
chr7 (110-159)||(9807665-9807714)
chr7 (115-164)||(14076541-14076590)
chr7 (115-164)||(14386569-14386618)
chr7 (110-159)||(16846644-16846693)
chr7 (121-275)||(20360982-20361136)
chr7 (120-159)||(18326072-18326111)
[»] scaffold0867 (1 HSPs)
scaffold0867 (174-286)||(4722-4834)
[»] chr1 (1 HSPs)
chr1 (98-282)||(15961057-15961241)
[»] chr4 (2 HSPs)
chr4 (120-286)||(11971035-11971201)
chr4 (51-286)||(11981736-11981974)
[»] chr8 (1 HSPs)
chr8 (109-200)||(27618331-27618422)
[»] chr3 (1 HSPs)
chr3 (110-159)||(3625575-3625624)


Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 286
Target Start/End: Original strand, 22063378 - 22063659
Alignment:
Q  5 ctatgaatcatcatcattggcggttgcaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacattggtgatgattataattgcga 104  Q
    |||||| |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  22063378 ctatgattcatcatcattggcagatgaaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacattagtgatgattataattgcga 22063477  T
Q  105 gggtattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||| |||||||||||||||| |||||| ||| ||    
T  22063478 gggtattactattgggcaatttgtgattatttcacttgatttgggcactgaggcatatactaaattgtttcctcctcatggtttcagtgaagtaccattt 22063577  T
Q  205 gttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatggcaaa 286  Q
    ||||||||||| |||| |||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  22063578 gttataccaaaactaagtgtcttaaatgattatctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaa 22063659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 6 - 286
Target Start/End: Original strand, 22069848 - 22070128
Alignment:
Q  6 tatgaatcatcatcattggcggttgcaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacattggtgatgattataattgcgag 105  Q
    ||||| |||||||||| | | | || ||||| ||||||||| || |||||||||||||||||||||||||||||||||  || |  ||||||||| | ||    
T  22069848 tatgattcatcatcatcgccagatgaaggttatgcatgtgagaggtagtgttaattggttggcaattcacaattacatcagttactattataatttcaag 22069947  T
Q  106 ggtattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattg 205  Q
    | ||||||||||| | |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| ||||||||||| |||    
T  22069948 gatattactattgaggaatttgtgattatttcacttgatttgggtaccgagacacatactaagttgttgcctcctcacggtttcgatgaagtgccatttg 22070047  T
Q  206 ttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatggcaaa 286  Q
    ||||||||||||||| ||| ||||| |||| ||||||       ||||||||||||| |||||||||| ||||||||||||    
T  22070048 ttataccaaatctaagtgttttaaaggattgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaa 22070128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 22088329 - 22088502
Alignment:
Q  5 ctatgaatcatcatcattggcggttgcaggttgtgcatgtgaaagatagtgttaattggttggcaattcacaattacattggtgatgattataattgcga 104  Q
    |||||| |||||||| | | |||| | |||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  22088329 ctatgactcatcatcttcgccggtggaaggttgtgtatgtgagaggtagtgttaattggttggcaattcacaattacattggtgatgattataattgcaa 22088428  T
Q  105 gggtattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctc 178  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  22088429 gggtattactattgagcaatttgtgattatttcacttgatttgggcactgaggcacatactaagttgttgcctc 22088502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 51 - 286
Target Start/End: Original strand, 22080650 - 22080885
Alignment:
Q  51 tagtgttaattggttggcaattcacaattacattggtgatgattataattgcgagggtattactattgggcaatttgtgattatttcacttgatttgggc 150  Q
    |||||||||||||||||||||||||||||| ||  ||||||||||| ||||| ||| |||  ||||||  |||||| |||||||||||||||||||||||    
T  22080650 tagtgttaattggttggcaattcacaattatatccgtgatgattattattgcaaggatatcgctattgaacaatttatgattatttcacttgatttgggc 22080749  T
Q  151 actgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnnc 250  Q
    || ||||||||| |||||||   |||||||||  |||||  |||||| ||  |||||||||||||||||| | | ||||| |||| ||||||       |    
T  22080750 accgagacacatgctaagtttcggcctcctcacagtttcgttgaagttccctttgttataccaaatctaagtatgttaaaggattgtctttgtttttctc 22080849  T
Q  251 atgatttcaaacaaactcattttgttatatggcaaa 286  Q
    ||||||||||||||||||||||| ||||||||||||    
T  22080850 atgatttcaaacaaactcattttattatatggcaaa 22080885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 22100398 - 22100510
Alignment:
Q  174 gcctcctcatggtttcaatgaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcatttt 273  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||       |||||||||||| |||||||||||    
T  22100398 gcctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcatttt 22100497  T
Q  274 gttatatggcaaa 286  Q
     ||||||||||||    
T  22100498 attatatggcaaa 22100510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 108 - 272
Target Start/End: Complemental strand, 6865037 - 6864873
Alignment:
Q  108 tattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgtt 207  Q
    ||||||||||| |||||||| ||||||||||||| |||||| |||| ||| |||||||   ||||  |||||||| ||||||| ||||||||||||||||    
T  6865037 tattactattgagcaatttgagattatttcacttcatttggacactaagatacatactcgtttgtctcctcctcagggtttcattgaagtgccaattgtt 6864938  T
Q  208 ataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattt 272  Q
       ||||||||||  || ||||| |||| ||| |        |||||||||||||||||||||||    
T  6864937 gccccaaatctaagcgtgttaaaggattgtctctatttttctcatgatttcaaacaaactcattt 6864873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 20351946 - 20352108
Alignment:
Q  120 gcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgttataccaaatcta 219  Q
    |||||||||||| ||||| |||||||||| |||||| || ||| ||  | | ||||| ||||| |||||||  ||||||||||| ||| ||||| |||||    
T  20351946 gcaatttgtgatcatttctcttgatttggacactgaaacgcattctctgcttttgccacctcaaggtttcacagaagtgccaatcgttgtaccatatcta 20352045  T
Q  220 aatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatgg 282  Q
    | ||| ||||| |||| ||||||       ||||||| |||||||||||||||||| ||||||    
T  20352046 agtgtgttaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgg 20352108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 108 - 282
Target Start/End: Complemental strand, 20374734 - 20374560
Alignment:
Q  108 tattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgtt 207  Q
    ||||||||||  ||||||| | |||||||| ||||||||||| ||||| |||||| || || | ||||||||||| || ||||  |||||||| ||||||    
T  20374734 tattactattcagcaatttatcattatttctcttgatttgggtactgaaacacattctcagcttttgcctcctcaaggcttcatggaagtgccgattgtt 20374635  T
Q  208 ataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatgg 282  Q
      |||| |||||| |||  |||| |||| ||||||       ||||||| |||||||||||||||||| ||||||    
T  20374634 gcaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgtaatatgg 20374560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 20338748 - 20338937
Alignment:
Q  93 ttataattgcgagggtattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaat 192  Q
    |||||||||||||  ||||||| ||  ||||||||||||||| ||  |||| ||| |||||||||||||| || || |  |||| ||||| ||||||| |    
T  20338748 ttataattgcgagaatattactgttcagcaatttgtgattatatctattgacttgagcactgagacacattctcagattctgccacctcaaggtttcact 20338847  T
Q  193 gaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatgg 282  Q
    |||| ||| |||||| |||||||| ||| ||| ||||| || ||||||||       ||||||| | || ||||||||||||| ||||||    
T  20338848 gaagcgccgattgttgtaccaaatttaagtgtgttaaacgactatctttgtttttcccatgattaccaaaaaactcattttgtaatatgg 20338937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 275
Target Start/End: Complemental strand, 20361433 - 20361266
Alignment:
Q  108 tattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgtt 207  Q
    ||||||||||   ||||||||||| ||||| |||||||||||||| || || | | || |  | ||||| ||||| |||||||  |||||||||||||||    
T  20361433 tattactattcatcaatttgtgatcatttctcttgatttgggcaccgaaacgctttctcaacttttgccacctcaaggtttcacggaagtgccaattgtt 20361334  T
Q  208 ataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgt 275  Q
     ||||| |||||| |||  |||| |||| ||||||       ||||||| ||||||||||||||||||    
T  20361333 gtaccatatctaagtgtgctaaaggattgtctttgtttttcacatgattacaaacaaactcattttgt 20361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 284
Target Start/End: Complemental strand, 661002 - 660902
Alignment:
Q  184 ggtttcaatgaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatggc 283  Q
    |||||| | ||| ||||| |||||||||||||||||| ||| ||||| |||| ||||||       || |||||||||||||||| ||||||||||||||    
T  661002 ggtttccaagaaatgccatttgttataccaaatctaagtgtgttaaaggattgtctttgtttttgtcacgatttcaaacaaactcgttttgttatatggc 660903  T
Q  284 a 284  Q
    |    
T  660902 a 660902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 16839610 - 16839561
Alignment:
Q  110 ttactattgggcaatttgtgattatttcacttgatttgggcactgagaca 159  Q
    ||||| ||| ||||||||||||||||||||||||||||||||| ||||||    
T  16839610 ttactgttgagcaatttgtgattatttcacttgatttgggcacggagaca 16839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 20126407 - 20126330
Alignment:
Q  120 gcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagt 197  Q
    |||||||||||||||||| ||||| |||||||||||||||||| || || |  |||| ||||| ||||||| ||||||    
T  20126407 gcaatttgtgattatttcccttgacttgggcactgagacacattctcagcttctgccacctcaaggtttcactgaagt 20126330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 9807665 - 9807714
Alignment:
Q  110 ttactattgggcaatttgtgattatttcacttgatttgggcactgagaca 159  Q
    ||||| |||| |||||||||||| |||||||||||||||| |||||||||    
T  9807665 ttactcttggtcaatttgtgattctttcacttgatttgggtactgagaca 9807714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 14076541 - 14076590
Alignment:
Q  115 attgggcaatttgtgattatttcacttgatttgggcactgagacacatac 164  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||| ||||    
T  14076541 attgagcaatttgtgattatctcacttgatttggggactgagacatatac 14076590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 164
Target Start/End: Original strand, 14386569 - 14386618
Alignment:
Q  115 attgggcaatttgtgattatttcacttgatttgggcactgagacacatac 164  Q
    |||| ||||||||||||||| |||||||||||||| ||||||||| ||||    
T  14386569 attgagcaatttgtgattatctcacttgatttggggactgagacatatac 14386618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 159
Target Start/End: Complemental strand, 16846693 - 16846644
Alignment:
Q  110 ttactattgggcaatttgtgattatttcacttgatttgggcactgagaca 159  Q
    ||||| ||| |||||||||||||||||| |||||||||||||| ||||||    
T  16846693 ttactgttgagcaatttgtgattatttctcttgatttgggcacggagaca 16846644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 275
Target Start/End: Original strand, 20360982 - 20361136
Alignment:
Q  121 caatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgttataccaaatctaa 220  Q
    |||||||| |||||||| || |||||||||||||| |||||| || || | || ||||| || | |||||   |||| || |||||| ||||| ||||||    
T  20360982 caatttgtcattatttctctcgatttgggcactgaaacacattcttagctttttcctccacaagatttcacgaaagtaccgattgttgtaccatatctaa 20361081  T
Q  221 atgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgt 275  Q
     ||| ||| | |||| ||||||       ||||||| ||||||||||||||||||    
T  20361082 gtgtgttagaggattgtctttgtttttcacatgattacaaacaaactcattttgt 20361136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 120 - 159
Target Start/End: Original strand, 18326072 - 18326111
Alignment:
Q  120 gcaatttgtgattatttcacttgatttgggcactgagaca 159  Q
    |||||||| |||||||||||||||||||||||| ||||||    
T  18326072 gcaatttgcgattatttcacttgatttgggcacggagaca 18326111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 174 - 286
Target Start/End: Complemental strand, 4834 - 4722
Alignment:
Q  174 gcctcctcatggtttcaatgaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcatttt 273  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||       |||||||||||| |||||||||||    
T  4834 gcctcctcatggtttcaatgaagtgccaattgttatacctaatctaagtgtcttaaatgattatctttgtttttctcatgatttcaaaaaaactcatttt 4735  T
Q  274 gttatatggcaaa 286  Q
     ||||||||||||    
T  4734 attatatggcaaa 4722  T

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Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 98 - 282
Target Start/End: Original strand, 15961057 - 15961241
Alignment:
Q  98 attgcgagggtattactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagt 197  Q
    ||||||| | |||| ||||||  || ||||||||| |||||||||||||||||||||||||||||||| |||||   |||||| | ||||||||||||||    
T  15961057 attgcgaagatatttctattgaacattttgtgattgtttcacttgatttgggcactgagacacatactcagttggcacctcctaaaggtttcaatgaagt 15961156  T
Q  198 gccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatgg 282  Q
     |||  ||||| ||||||||||| ||| |||||| ||| ||||||       ||||| ||||||||||| ||| | |||||||||    
T  15961157 tccatatgttaaaccaaatctaagtgtgttaaataattgtctttgtttttctcatgacttcaaacaaacacatatggttatatgg 15961241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 286
Target Start/End: Complemental strand, 11971201 - 11971035
Alignment:
Q  120 gcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgttataccaaatcta 219  Q
    ||||||||||||||||||||||||||| |||||||||| | ||||| |||||   |||||||| || ||  || | |||||| || |||| |||||||||    
T  11971201 gcaatttgtgattatttcacttgattttggcactgagaaatatactcagttgcgacctcctcaaggatttgatcaggtgccatttcttatgccaaatcta 11971102  T
Q  220 aatgtcttaaatgattatctttgnnnnnnncatgatttcaaacaaactcattttgttatatggcaaa 286  Q
    |  || ||| | |||| ||||||       ||||||||  |||||||||||||||||||||||||||    
T  11971101 agcgtgttagaggattgtctttgtttttctcatgattttgaacaaactcattttgttatatggcaaa 11971035  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 51 - 286
Target Start/End: Complemental strand, 11981974 - 11981736
Alignment:
Q  51 tagtgttaattggttggcaattcacaattacattggt---gatgattataattgcgagggtattactattgggcaatttgtgattatttcacttgatttg 147  Q
    |||||||  ||||||| ||||||| ||||||| ||||   ||||||||| ||||||||| | |||| || | |||||||||| |||| || ||||| |||    
T  11981974 tagtgttttttggttgacaattcagaattacaatggttatgatgattatgattgcgaggattttacaatcgagcaatttgtggttatgtcgcttgacttg 11981875  T
Q  148 ggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgccaattgttataccaaatctaaatgtcttaaatgattatctttgnnnnn 247  Q
    |||| ||||| | ||||| |  ||  ||||||||| || ||  || |||||||| || || | |||||| ||| ||| ||| | |||| ||||||         
T  11981874 ggcattgagaaatatactcaaatgcggcctcctcaagggtttgatcaagtgccatttcttgtgccaaatgtaagtgtgttacaggattgtctttgttttt 11981775  T
Q  248 nncatgatttcaaacaaactcattttgttatatggcaaa 286  Q
      ||||||||  |||||||||||||||||||||||||||    
T  11981774 ctcatgattttcaacaaactcattttgttatatggcaaa 11981736  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 109 - 200
Target Start/End: Original strand, 27618331 - 27618422
Alignment:
Q  109 attactattgggcaatttgtgattatttcacttgatttgggcactgagacacatactaagttgttgcctcctcatggtttcaatgaagtgcc 200  Q
    ||||||||||  ||||||||||||||||| ||||||||| | ||||||||||| ||  ||||| | |||||||  |||||||||||||||||    
T  27618331 attactattgatcaatttgtgattatttcgcttgatttgagtactgagacacacacacagttgcttcctcctcggggtttcaatgaagtgcc 27618422  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 3625575 - 3625624
Alignment:
Q  110 ttactattgggcaatttgtgattatttcacttgatttgggcactgagaca 159  Q
    ||||| ||| ||||||||| ||| |||||||||||||||| |||||||||    
T  3625575 ttactgttgagcaatttgttattgtttcacttgatttggggactgagaca 3625624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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