View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_high_21 (Length: 270)
Name: NF14934_high_21
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 28832798 - 28833041
Alignment:
| Q |
13 |
atactactagtactataacttctaagacattggtcaatgttatctcatctccaaacaatggtaaaaattagttaaggatggtgctacaacttaaactgat |
112 |
Q |
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| T |
28832798 |
atactactagtactataacttctaagacattggtcaatgttatctcatctccaaacaatggtaaaaattagttaaggatggtgctacaacttaaactgat |
28832897 |
T |
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| Q |
113 |
attcctaacgttggtgtgttggaacatattaattagttatgatgattatctagtacatggtgattcacaaacaagtacgataatgattggatgtgacaaa |
212 |
Q |
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| T |
28832898 |
attcctaacgttggtgtattggaacatattaattagttatgctgattgtctagtacatggtgattcacaaacaaatatgctattgaatggatgtaacata |
28832997 |
T |
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| Q |
213 |
ttatcgtatagtcaagcagacatgcgtagcatattatatgaaaa |
256 |
Q |
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| T |
28832998 |
ttctcctatactgatgcaaacatgcgtcgcatatcctatgaaaa |
28833041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 28823628 - 28823699
Alignment:
| Q |
84 |
ttaaggatggtgctacaacttaaactgatattcctaacgttggtgtgttggaacatattaattagttatgat |
155 |
Q |
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| T |
28823628 |
ttaaggatgatgctgcaactcaagctagtgttcataaccttggtgtgttggaacatattaattagttatgat |
28823699 |
T |
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