View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14934_high_24 (Length: 261)
Name: NF14934_high_24
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 714358 - 714098
Alignment:
| Q |
1 |
ttctaattaggaagtattgttttattgtactaaggtaatagacatgtggtgtcacaaactggaaacctcacttccctatccctgaagcaatagttgttca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| | |
|
|
| T |
714358 |
ttctaattaagaagtattgttttattgtactaagttaatagacatgtggagtcacaaactggaaacctcacttccctttcgctgaagcaatagttgttta |
714259 |
T |
|
| Q |
101 |
ttttgtgaaaattgactggaagacatttaagactgcatcaaattattctagtcacaatt----------aaattgattgataccttttccattattatta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
714258 |
ttttgtgaaaattgactggaagacatttaagactgcatcaaattattctactcacaattcatgtttaaaaaattgattgataccttttcc---attatta |
714162 |
T |
|
| Q |
191 |
catataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagaattat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
714161 |
catataagattacaaacattctctttatttgccaatcacaatgctagagtgtgtgtagtattat |
714098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University