View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14934_high_25 (Length: 248)
Name: NF14934_high_25
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 33806728 - 33806949
Alignment:
| Q |
19 |
attaagaactaactcagactatcacccatttttgcttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggaccctg |
118 |
Q |
| |
|
|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33806728 |
attaagaactaacttagaccatcacccaattttccttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggacccta |
33806827 |
T |
|
| Q |
119 |
catacagactatagaaacattgtaacctcaacctggaattttaatgtagttggttgtcccatgttcattctatcctaaaatctccagatgcgcaaaataa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
33806828 |
catacagactatagaaacattgtaacctcaacctagaattttaatgtagttggttgtcccatgttcattctatcctaaaagctccagatgctcaaaataa |
33806927 |
T |
|
| Q |
219 |
accttaggaactagaacaaaga |
240 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
33806928 |
accttagaaactggaacaaaga |
33806949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University