View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_high_29 (Length: 216)
Name: NF14934_high_29
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_29 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 31546184 - 31546004
Alignment:
| Q |
17 |
taggtatctttaacacaaagttcacaaaacactttaacagaaaacaacaaagtcataagttgaacacaatttcatattaaagattataagggattaggtt |
116 |
Q |
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| T |
31546184 |
taggtatctttaacacaaagttcacaaaacactttaacagaaaacaacaaagtcataagttgaacacaatttcatattaaagagtataagggattaggtt |
31546085 |
T |
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| Q |
117 |
tttcttttccaaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaaattag |
197 |
Q |
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| T |
31546084 |
tttcttttccaaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttgaaagggaagaaaattag |
31546004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 24 - 192
Target Start/End: Original strand, 44163355 - 44163516
Alignment:
| Q |
24 |
ctttaacacaaagttcacaaaacactttaacagaaaacaacaaagtcataagttgaacacaatttcatattaaagattataaggga-ttaggtttttctt |
122 |
Q |
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| T |
44163355 |
ctttaacacaga-ttcacaaaacactttaatagaaaacaacaaccttata--ttgaacccaatttcagattagagagtagaagggggttagggttt-ct- |
44163449 |
T |
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| Q |
123 |
ttccaaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaa |
192 |
Q |
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| T |
44163450 |
---caaatcaaaacaccatcaaatctgaaacaaaataaaaggcaatatttcgaatttggaagggaagaaa |
44163516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 38727575 - 38727645
Alignment:
| Q |
127 |
aaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaaattag |
197 |
Q |
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| T |
38727575 |
aaatcaaaacaacatcaaattcaaggcaaaataaaaggttatatttcgaatttgaaagggaagaaacttag |
38727645 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 41425166 - 41425006
Alignment:
| Q |
24 |
ctttaacacaaagttcacaaaacactttaacagaaaacaacaaagtcataagttgaacacaatttcatattaaagattataagggattaggtttttcttt |
123 |
Q |
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| T |
41425166 |
ctttaacacaaa-ttcacaaaacactttaatagaaaacaacaaccctata--ttgaacccaatttcggattagagagtagaaggggttaggattt-ct-- |
41425073 |
T |
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| Q |
124 |
tccaaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaa |
192 |
Q |
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| T |
41425072 |
--caaatcaaaacaccatcaaatctgaaacaaaataaaaagcaatatttcgaatttggaagggaagaaa |
41425006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 37 - 197
Target Start/End: Complemental strand, 105258 - 105103
Alignment:
| Q |
37 |
ttcacaaaacactttaacagaaaacaacaaagtcataagttgaacacaatttcatattaaagattataagggattaggtttttcttttccaaattaaaac |
136 |
Q |
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|||||| ||||||| ||| |||||||||| | |||||| || |||||||||||| |||| ||| |||||||| ||||| |||| ||||| |||| |
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| T |
105258 |
ttcacataacacttcaactgaaaacaacatattcataaatttaacacaatttcagattagagaatataaggggttagg-----gtttttcaaatcaaaat |
105164 |
T |
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| Q |
137 |
accatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaaattag |
197 |
Q |
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| T |
105163 |
aacaacaaacatgaggcaaaattagaggctacattcggaatttggaagggaagaaaattag |
105103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 1068461 - 1068527
Alignment:
| Q |
126 |
caaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaa |
192 |
Q |
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| T |
1068461 |
caaatcaaaacaccatcaaatctgaaacaaaataaaaagcaatattttgaatttggaagggaagaaa |
1068527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 23275835 - 23275906
Alignment:
| Q |
126 |
caaattaaaacaccatcaaatctgaggcaaaataaaaggctatatttcaaatttggaagggaagaaaattag |
197 |
Q |
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| T |
23275835 |
caaatcaaaacaacatcaaattcaaggcaaaataaaaggttatatttcgaatttagaagggaagaaacttag |
23275906 |
T |
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