View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_high_5 (Length: 526)

Name: NF14934_high_5
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_high_5
NF14934_high_5
[»] chr6 (1 HSPs)
chr6 (18-516)||(1885589-1886087)
[»] scaffold0867 (1 HSPs)
scaffold0867 (335-516)||(2102-2283)
[»] chr1 (1 HSPs)
chr1 (335-516)||(16681242-16681423)
[»] chr8 (1 HSPs)
chr8 (335-516)||(5189891-5190073)
[»] chr4 (3 HSPs)
chr4 (335-516)||(23561375-23561556)
chr4 (339-516)||(48264357-48264534)
chr4 (247-305)||(19485507-19485565)
[»] chr7 (2 HSPs)
chr7 (342-509)||(9212240-9212407)
chr7 (247-335)||(29681576-29681664)
[»] chr2 (2 HSPs)
chr2 (359-516)||(29986627-29986784)
chr2 (247-335)||(13250604-13250692)
[»] chr5 (1 HSPs)
chr5 (275-339)||(10524023-10524087)
[»] chr3 (1 HSPs)
chr3 (247-335)||(4489692-4489780)


Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 516
Target Start/End: Complemental strand, 1886087 - 1885589
Alignment:
Q  18 taatgtagagtatacatgtagtttaaaatcttctttcttgttagagaaactgagagaatatgtgatatgtacttagtctaacacttttcattgaacttta 117  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1886087 taatgtagagtatacatgtagtttaaaatcttctttcttgatagagaaactgagagaatatgtgatatgtacttagtctaacacttttcattgaacttta 1885988  T
Q  118 ttaaactttagatttaatacatatttagtctctctatttttcctgattcatgattttagcctcttcattttaaatctgaaacataatcatccaaatttta 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1885987 ttaaactttagatttaatacatatttagtctctctatttttcctgattcatgattttagcctcttcattttaaatctgaaacataatcatccaagtttta 1885888  T
Q  218 aaatttatgaaattttttctaatactaagtttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataat 317  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1885887 aaatttatgaaattttttctaacactaagtttatcaaagaaaacagaaaaatcaccttagcaatgcagtactacggtaccaagtaaaaatttgacataat 1885788  T
Q  318 ggtattgggaaatgtgataccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgc 417  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||    
T  1885787 ggtattgggaaatgtgataccagttgcgtcaaccgtcagctgaaaatattcatcatgttgaccaagagcttcaactatgcgaaggaagacatgtttatgc 1885688  T
Q  418 attcgataccttctacgaaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
    ||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  1885687 attcggtaccttcgacgaaactactcatccatgtaaaccggagcttctgaaaaataatcgttgaataaccgcttatatccttcttcacgattcctctct 1885589  T

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Target: scaffold0867 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 335 - 516
Target Start/End: Complemental strand, 2283 - 2102
Alignment:
Q  335 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 434  Q
    ||||||||||||||||  || |||||||||||||||||||||| ||||||||||||||||| |||| ||| ||||||||||||||||| ||||||| |||    
T  2283 taccagttgcgtcaaccttcggctgaaaatattcatcatgttggctaagagcttcaactatacgaaggaaaacatgtttacgcattcggtaccttcgacg 2184  T
Q  435 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
     || ||||||||  || ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2183 gaattgctcatctgtgaaaaccggagtttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 2102  T

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Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 335 - 516
Target Start/End: Original strand, 16681242 - 16681423
Alignment:
Q  335 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 434  Q
    ||||| ||||||||||  || ||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||     
T  16681242 taccacttgcgtcaaccctcggctgaaaatattcatcatgttgactaagagcttcaactatgtgaaggaagacatgtttacgcattcgataccttcaaca 16681341  T
Q  435 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
     |||||||||||| ||||||| ||| |||||||||||||||||| |||||| |||||||| || ||||||| ||||||||||    
T  16681342 gaactgctcatccgtgtaaactggagcttctgaaaaataatcatcgaataaacgcttatgcccgtcttcacaattcctctct 16681423  T

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Target: chr8 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 335 - 516
Target Start/End: Complemental strand, 5190073 - 5189891
Alignment:
Q  335 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 434  Q
    ||||||||||||||||  ||  ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||  |||    
T  5190073 taccagttgcgtcaaccctcgactgaaaatattcatcatgttgactaagagcttcaattatgcgaaggaagacatgtttacgcattcggtaccttagacg 5189974  T
Q  435 aaactgctcatccatgta-aaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
     ||||||| |||| |||| || |||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5189973 gaactgctgatccgtgtataatcggagcttatgaaaaataatcattgaataaccgcttatgtccttcttcacaattcctctct 5189891  T

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Target: chr4 (Bit Score: 98; Significance: 5e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 335 - 516
Target Start/End: Original strand, 23561375 - 23561556
Alignment:
Q  335 taccagttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacg 434  Q
    |||||||||| |||||  ||||||||||||| ||||||| ||| |||||||||||||||| |||||  |||||||||||| ||||||||||||||  |||    
T  23561375 taccagttgcatcaaccctcagctgaaaatactcatcatattggctaagagcttcaactaagcgaagaaagacatgtttatgcattcgataccttagacg 23561474  T
Q  435 aaactgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
     |||||||||||| |||| || |||  |||||||||||||||||||||||| |||| |||||||||||| ||||||||||||    
T  23561475 gaactgctcatccgtgtacactggagtttctgaaaaataatcattgaataatcgctcatgtccttcttcgcgattcctctct 23561556  T

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Target: chr4; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 339 - 516
Target Start/End: Original strand, 48264357 - 48264534
Alignment:
Q  339 agttgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaac 438  Q
    |||||| |||||  |||||||||||||  |||||| ||| | ||||||||||||||||||||  |||||||||||| ||||||| ||||||  ||  |||    
T  48264357 agttgcatcaaccctcagctgaaaatacccatcatattggccaagagcttcaactatgcgaagaaagacatgtttatgcattcggtaccttagacagaac 48264456  T
Q  439 tgctcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
    ||||||||| |||| ||  ||  |||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  48264457 tgctcatccgtgtacactagagtttctgaaaaataatcattgaataatcgcttgtgtccttcttcgcgattcctctct 48264534  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 305
Target Start/End: Complemental strand, 19485565 - 19485507
Alignment:
Q  247 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaa 305  Q
    ||||||||||||||||| ||||| ||| |||||||||| ||||||||| ||||| ||||    
T  19485565 tttatcaaagaaaacaggaaaactaccgtagcaatgcactactacggtgccaagaaaaa 19485507  T

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Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 342 - 509
Target Start/End: Original strand, 9212240 - 9212407
Alignment:
Q  342 tgcgtcaacagtcagctgaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaactgc 441  Q
    |||||||||  ||||||||||||| ||||||||||||  ||||| |||||||||| ||| ||| ||||||||||||||||| ||||||| |||||| |||    
T  9212240 tgcgtcaaccctcagctgaaaatactcatcatgttgatcaagagtttcaactatgtgaaggaaaacatgtttacgcattcggtaccttcgacgaaattgc 9212339  T
Q  442 tcatccatgtaaaccggaacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgatt 509  Q
    |||||| |||||||  || ||||| |||||||||||||||||||| | | ||||||||||||| ||||    
T  9212340 tcatccgtgtaaactagagcttctaaaaaataatcattgaataactgttcatgtccttcttcatgatt 9212407  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 29681576 - 29681664
Alignment:
Q  247 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 335  Q
    ||||||||||||| |||| |||||||  | |||||||||| ||||| | |||||| ||||  ||| || ||| |||||| |||||||||    
T  29681576 tttatcaaagaaatcagataaaccacagttgcaatgcagtgctacgttgccaagtgaaaagctgaaattatgttattggaaaatgtgat 29681664  T

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Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 359 - 516
Target Start/End: Original strand, 29986627 - 29986784
Alignment:
Q  359 gaaaatattcatcatgttgactaagagcttcaactatgcgaaagaagacatgtttacgcattcgataccttctacgaaactgctcatccatgtaaaccgg 458  Q
    ||||||| |||||||||| || ||||||||| || || | || |||| |||||||| ||||||||||||||| || |||||||| |||||||||  |  |    
T  29986627 gaaaataatcatcatgtttaccaagagcttcgacgatacaaaggaaggcatgtttatgcattcgataccttcgacaaaactgctaatccatgtaccctag 29986726  T
Q  459 aacttctgaaaaataatcattgaataaccgcttatgtccttcttcacgattcctctct 516  Q
    |  ||||||||| |||| |||||| |||||||||||||||||||||||||||||||||    
T  29986727 agtttctgaaaagtaattattgaacaaccgcttatgtccttcttcacgattcctctct 29986784  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 335
Target Start/End: Original strand, 13250604 - 13250692
Alignment:
Q  247 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 335  Q
    ||||||||||||| |||| |||||||| | |||||||||| ||| ||| |||||| ||||  |||||| ||| ||||||||||||||||    
T  13250604 tttatcaaagaaatcagataaaccaccgttgcaatgcagtgctatggtgccaagtgaaaagctgacattatgctattgggaaatgtgat 13250692  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 10524023 - 10524087
Alignment:
Q  275 tagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgatacca 339  Q
    |||||||||| ||||||||| ||||| ||||   ||||||| || ||| ||||||||||||||||    
T  10524023 tagcaatgcaatactacggtgccaagaaaaagcctgacatattgctatggggaaatgtgatacca 10524087  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 335
Target Start/End: Complemental strand, 4489780 - 4489692
Alignment:
Q  247 tttatcaaagaaaacagaaaaaccaccttagcaatgcagtactacggtaccaagtaaaaatttgacataatggtattgggaaatgtgat 335  Q
    ||||||||||||| |||| |||||||| | |||||||||| ||| ||| |||| | ||||  | |||| |||  |||||||||||||||    
T  4489780 tttatcaaagaaatcagataaaccaccgttgcaatgcagtgctatggtgccaaatgaaaagctcacattatgccattgggaaatgtgat 4489692  T

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