View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_high_8 (Length: 504)
Name: NF14934_high_8
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 43571718 - 43572196
Alignment:
| Q |
11 |
caaaggtctgacaactagccagcttgaggacattggttgccaaataatacttggaaatacttatcatttggctttgagacctacttctgagcttcttgac |
110 |
Q |
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| T |
43571718 |
caaaggtttgacaactagccagcttgaggacattggttgccaaataatacttggaaatacttatcatttggctttgagacctacttctgagcttcttgac |
43571817 |
T |
|
| Q |
111 |
caacttggtggtcttcacaaatttatgaattggccacgcgccatgcttaccgactctggtggctttcaaatggtttcacttttgcatcttgcggatatca |
210 |
Q |
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| T |
43571818 |
caacttggtggtcttcacaaatttatgaattggccacgcgccatgcttaccgactctggtggctttcaaatggtttcacttttgcatcttgcggatatca |
43571917 |
T |
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| Q |
211 |
cagaaaaaggtgtcacgtttcagtcacctgtagatggaaagccgatgcttctaacacccgaggactcaattcaaatacaagtaagtccattacttacaca |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571918 |
cagaaaaaggtgtcacatttcagtcacctgtagatggaaagccgatgcttctaacacccgaggactcaattcaaatacaagtaagtccattacttacaca |
43572017 |
T |
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| Q |
311 |
cacatttgtagtgtgctgtgctcctctaattcacttgttttcattttttgtcatatattgtgcagaatagaattggagcagatatcataatggctctcga |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43572018 |
cacatttgtagtgtgctgtgctcctctaattcacttgttttcattttttgtcatatattctgcagaatagaattggagcagatatcataatggctctcga |
43572117 |
T |
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| Q |
411 |
cgatgttataaagaccaccgttactggtccaagagttgaggaagctatgtaccgaacacttagatggatagacagatgt |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43572118 |
cgatgttataaagaccaccgttactggtccaagagttgaggaagctatgtaccgaacacttagatggatagacagatgt |
43572196 |
T |
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