View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_low_11 (Length: 389)

Name: NF14934_low_11
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_low_11
NF14934_low_11
[»] chr8 (2 HSPs)
chr8 (21-386)||(10386779-10387142)
chr8 (258-306)||(10172476-10172524)
[»] chr4 (4 HSPs)
chr4 (229-315)||(30546441-30546533)
chr4 (228-337)||(37538109-37538226)
chr4 (259-298)||(45994745-45994784)
chr4 (258-306)||(31053047-31053095)
[»] chr7 (2 HSPs)
chr7 (258-306)||(30017481-30017529)
chr7 (258-299)||(18358801-18358842)
[»] chr2 (3 HSPs)
chr2 (258-288)||(11610772-11610802)
chr2 (258-306)||(1465744-1465792)
chr2 (292-337)||(32402222-32402269)
[»] chr3 (1 HSPs)
chr3 (185-246)||(2973050-2973111)
[»] chr1 (2 HSPs)
chr1 (258-315)||(40614061-40614118)
chr1 (258-306)||(51587381-51587429)
[»] chr6 (1 HSPs)
chr6 (258-298)||(6453035-6453075)
[»] chr5 (1 HSPs)
chr5 (258-306)||(14717343-14717391)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 21 - 386
Target Start/End: Complemental strand, 10387142 - 10386779
Alignment:
Q  21 gagagagagaataacactccccttcttatacaagatatttgaattacacacacttcgttataaaacgtgcacttccctttctaaaagtactttgcttccc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  10387142 gagagagagaataacactccccttcttatacaagatatttgaattacacacacttcgttataaaacgtgcacttccctttctaa--gtactttgcttccc 10387045  T
Q  121 tctagtctaatataatcaaatttgaaattatgatttaaaattgcttactaccatttaaagattcattgtaaaattatattacatgtgcattcaatgatat 220  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  10387044 tctattctaatataatcaaatttgaaattatgatttaaaattgtttactaccatttaaagattcattgtaaaattattttacatgtgcatttaatgatat 10386945  T
Q  221 atattcccatcaatcaatgaatatgaaaacacatgagtattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacactgtcg 320  Q
    ||  |||  |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10386944 attgtcctgtcaatcaatgaatatgaaaacatatgagtgttcattaattaacgtgacaacacatcgttggatgcatgtgtgaaatacatttacactgtcg 10386845  T
Q  321 gtatagtaattaaactcaacataatatattaaatacacactataattcatatagtattatctaccc 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  10386844 gtatagtaattaaactcaacataatatattaaatacacactataattcatatagttttatataccc 10386779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 10172476 - 10172524
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||||| ||||| |||||||||| |||| |||||||||||||| |||||    
T  10172476 tattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaata 10172524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 315
Target Start/End: Original strand, 30546441 - 30546533
Alignment:
Q  229 atcaatcaatgaatatgaaaacacatgagt------attcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacac 315  Q
    |||||| |||||||||||||| ||||||||      ||||| ||||||||||||||||| |||||| ||||||||||| ||||| || |||||    
T  30546441 atcaattaatgaatatgaaaatacatgagttgtcttattcactaattaacgtgacaacatatcgttggatgcatgtgtaaaataaatgtacac 30546533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 337
Target Start/End: Original strand, 37538109 - 37538226
Alignment:
Q  228 catcaatcaatgaatatgaaaacacatgagt------attcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacactgtc-- 319  Q
    ||||||| |||||||||||||||| ||||||      ||||||||||| | ||  ||||||||||||  ||||||||||||||||  |||||||||||      
T  37538109 catcaattaatgaatatgaaaacatatgagttgtcgcattcattaattgatgtcgcaacacatcgttgaatgcatgtgtgaaataactttacactgtcag 37538208  T
Q  320 ggtatagtaattaaactc 337  Q
     |||||| ||||||||||    
T  37538209 tgtatagcaattaaactc 37538226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 45994784 - 45994745
Alignment:
Q  259 attcattaattaacgtgacaacacatcgtttgatgcatgt 298  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  45994784 attcattaattcacgtgacaacacatcgtttgatgcatgt 45994745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 31053047 - 31053095
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||||||||||| ||| ||||||||||| || ||||||||||| |||||    
T  31053047 tattcattaattgacgcgacaacacatcattggatgcatgtgtaaaata 31053095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 30017481 - 30017529
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||||||||||| |||||||||| ||||||| ||||||||||| |||||    
T  30017481 tattcattaattgacgtgacaacgcatcgttggatgcatgtgtaaaata 30017529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 299
Target Start/End: Complemental strand, 18358842 - 18358801
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtg 299  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  18358842 tattcattaattgacatgacaacacatcatttgatgcatgtg 18358801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 288
Target Start/End: Complemental strand, 11610802 - 11610772
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtt 288  Q
    |||||||||||||||||||||||||||||||    
T  11610802 tattcattaattaacgtgacaacacatcgtt 11610772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 1465792 - 1465744
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||| ||||||| ||||||||||||||| || ||||||||||| |||||    
T  1465792 tatttattaattgacgtgacaacacatcattggatgcatgtgtaaaata 1465744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 337
Target Start/End: Complemental strand, 32402269 - 32402222
Alignment:
Q  292 tgcatgtgtgaaatacatttacactgtcg--gtatagtaattaaactc 337  Q
    ||||||||| ||||| |||||||||||||  |||||||||||||||||    
T  32402269 tgcatgtgtaaaataaatttacactgtcggtgtatagtaattaaactc 32402222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 185 - 246
Target Start/End: Original strand, 2973050 - 2973111
Alignment:
Q  185 attgtaaaattatattacatgtgcattcaatgatatatattcccatcaatcaatgaatatga 246  Q
    ||||||||||||| |||||| |||||| ||| |||| | ||| | |||||||||||||||||    
T  2973050 attgtaaaattattttacatttgcatttaataatatgttttcacgtcaatcaatgaatatga 2973111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 40614118 - 40614061
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaatacatttacac 315  Q
    |||| ||||||||||||||||||| |||  |||||| |||| | ||||||||||||||    
T  40614118 tatttattaattaacgtgacaacatatcacttgatgtatgtttaaaatacatttacac 40614061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Complemental strand, 51587429 - 51587381
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||||||||||| ||||  |||||||| ||||||||||||||| |||||    
T  51587429 tattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaata 51587381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 6453035 - 6453075
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgt 298  Q
    |||||||||||| ||||||||||||||| || |||||||||    
T  6453035 tattcattaattgacgtgacaacacatcattagatgcatgt 6453075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 306
Target Start/End: Original strand, 14717343 - 14717391
Alignment:
Q  258 tattcattaattaacgtgacaacacatcgtttgatgcatgtgtgaaata 306  Q
    |||||||||||| | ||||||||||||| || ||||||||||| |||||    
T  14717343 tattcattaattgatgtgacaacacatcattagatgcatgtgtaaaata 14717391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University