View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14934_low_15 (Length: 303)
Name: NF14934_low_15
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_low_15 |
 | |
|
| [»] scaffold0070 (1 HSPs) |
| | |
|
| [»] scaffold0830 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0070 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0070
Description:
Target: scaffold0070; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 16545 - 16830
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16545 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatttggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
16644 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
16645 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagaagttgcat |
16744 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| || |||||||||||||||| |||| |||||||| | |||||||| |||||||| ||||| |||||||| |
|
|
| T |
16745 |
ctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaat |
16830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 17)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 288
Target Start/End: Original strand, 24912585 - 24912870
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24912585 |
gagctttgatgtagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
24912684 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
24912685 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcat |
24912784 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| || || ||||||||||||| |||| |||||||| | |||||||| |||||||| ||||| |||||||| |
|
|
| T |
24912785 |
ctgcattggaatatcttcatcttggttcttcaatgcctgtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaat |
24912870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25570445 - 25570160
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25570445 |
gagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtg |
25570346 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25570345 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcat |
25570246 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| ||| |||||| || |||||||||||||||| |||| |||| ||| | ||||||| |||||||||||||| |||||||| |
|
|
| T |
25570245 |
ctgcattgaaatatcttcatcatggttcttcaatgcctgtggttcactgtgatctaaagccctccaatgtcatgttggatgaaaat |
25570160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25453541 - 25453256
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25453541 |
gagctttgatgaagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggta |
25453442 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25453441 |
atggaattcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctcagtttcttgcaaaggttaaatataatgatagatgttgcat |
25453342 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| || |||||||||||||||| |||| |||||||| | |||||||| | |||||| ||||| |||||||| |
|
|
| T |
25453341 |
ctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagccttctaatgtcttgttggatgaaaat |
25453256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25695919 - 25695634
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25695919 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
25695820 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25695819 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcat |
25695720 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| | ||||||||| ||||| ||| |||||||| | |||||||| |||||||| ||||| |||||||| |
|
|
| T |
25695719 |
ctgcattggaatatctccatcatggttcctcaataccagtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaat |
25695634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 3 - 273
Target Start/End: Complemental strand, 25323215 - 25322945
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25323215 |
gagctttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtg |
25323116 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25323115 |
atggagttcatgtcaaatggaagtgttgacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcat |
25323016 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtc |
273 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||| |||| |||||||| | |||||||| |||||||| |
|
|
| T |
25323015 |
ctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgtgatctaaagccttccaatgtc |
25322945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 3 - 193
Target Start/End: Original strand, 24874958 - 24875148
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
24874958 |
gagctttgatgcagaatgcaatgcaatgagaaatctacgtcatcgaaatctggtaaagattatcagtagttgctcaaatcttgatttcaaatcattggtg |
24875057 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatag |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24875058 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatag |
24875148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 25605196 - 25604963
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25605196 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
25605097 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25605096 |
atggagttcatgtcaaatggaagtgtagaaaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcat |
25604997 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
|||| |||||||||| || ||||||||||||||| |
|
|
| T |
25604996 |
ctgcattggaatatcttcatcatggttcttcaat |
25604963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25715752 - 25715467
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25715752 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgacatcggaatctggtaaagattatcagaagttgctcaaatcttgatttcaaatcattggtg |
25715653 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25715652 |
atggagttcatgtcaaatggaagtgtagaaaaatggttatattcaaataaatattgtctaagtttcttgcaaaggttaaatataatgatagatgttgcat |
25715553 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| | || |||||||||||| ||| |||||||| | |||||||| |||||||| ||||| |||||||| |
|
|
| T |
25715552 |
ctgcattggaatatctccatcgtggttcttcaataccagtggttcattgtgatctaaagccttccaatgtcttgttggatgaaaat |
25715467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 3 - 234
Target Start/End: Complemental strand, 25341539 - 25341308
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25341539 |
gagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatatggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtg |
25341440 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25341439 |
atggagttcatgtcaaatggaagtgtagacaattggttatattcaaataacaattgaataaatttcttgcaaaggttaaatataatgatagatgttgcat |
25341340 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttca |
234 |
Q |
| |
|
|||| |||||||||| | ||||||||||||| |
|
|
| T |
25341339 |
ctgcattggaatatctccatcatggttcttca |
25341308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 25647571 - 25647338
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
25647571 |
gagctttgatgcagaatgtaatgcaatgagaaatctacgacatcgaaatctggtaaagattatcagaagttgatcaaatcttgatttcaaatcattggtg |
25647472 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25647471 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttgcaaaggttaaatataatgatagatgttgcat |
25647372 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
| | |||||||||| | ||||||||| ||||| |
|
|
| T |
25647371 |
cagaattggaatatctccatcatggttcatcaat |
25647338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 25800837 - 25800604
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25800837 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgtcatcgaaatttggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
25800738 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||| |
|
|
| T |
25800737 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataactattgtctaaatttcttacaaaggttaaatataatgatagatgttgcat |
25800638 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
|||| | ||||||| | ||||||||||||||| |
|
|
| T |
25800637 |
ctgcagtagaatatctccatcatggttcttcaat |
25800604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25686209 - 25685921
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||| |
|
|
| T |
25686209 |
gagctttgatgcagaatgcaatgcgatgagaaatctacgacatcgaaatctagtaaagattatcggtagttgctcaaatcttgattttaaatcattggtg |
25686110 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaa---ataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||| ||| |
|
|
| T |
25686109 |
atggagttcatgtcaaatggaagtgtagacaaatggttatattcaaataataactattgtctaaatttcttacaaaggttaaatataatgatagatgttg |
25686010 |
T |
|
| Q |
200 |
catctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||| |||| ||||||| | |||||||| | |||||| ||||| |||||||| |
|
|
| T |
25686009 |
catctgcattggaatatcttcatcatggttcttcaatacctgtggttcattgcgatctaaagccttcgaatgtcttgttggatgaaaat |
25685921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 3 - 236
Target Start/End: Complemental strand, 23258763 - 23258530
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
23258763 |
gagctttgatgcagaatgcaatgcaatgagaaatctacggcatcgaaatctggttaagattatcagcagttgttccaatcttgatttcaaatcattggtg |
23258664 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
23258663 |
atggagttcatgtcaaatggaagtgtggacaaatggttatattcagataaccattgcttaaatttcttgcaaaggttaaatataatgatagatgttgcat |
23258564 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||| |
|
|
| T |
23258563 |
ctgcattggaatatctccatcatggttcttcaat |
23258530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #14
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 2 - 236
Target Start/End: Original strand, 22900310 - 22900544
Alignment:
| Q |
2 |
ggagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggt |
101 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||| |||||| ||||||||||| ||||||| |
|
|
| T |
22900310 |
ggagctttgatcgagaatgcaatgcattgagaaatctacggcatcgaaatctggttaagattatcagcagttgttcaaatattgatttcaaagcattggt |
22900409 |
T |
|
| Q |
102 |
gatggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgca |
201 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||||||||||||||| | |||| ||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22900410 |
gatggagttcatgtcaaatggaagtgtggacaaatggttatattcaaataattgttgtttaaatttcttgcaaaggttaaatataatgatagatgttgca |
22900509 |
T |
|
| Q |
202 |
tctgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
| ||| |||||||||| | ||||||||||||||| |
|
|
| T |
22900510 |
tatgcattggaatatctccatcatggttcttcaat |
22900544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #15
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 25476220 - 25475935
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||| |||||||||||||||| || |||||||| | ||||| |||||||| |||||||||||||||||| |
|
|
| T |
25476220 |
gagctttgatgtagaatgcaatgcaacgagaaatctacgacatcgaaatcttgttaagattatttgtagttgttcaaatctcgatttcaaatcattggtg |
25476121 |
T |
|
| Q |
103 |
atggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcat |
202 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||| |||||| | |||| | ||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
25476120 |
atggagttcatgtcaaatggaagtgtggacaaatggttatatttaaataattgttgtttgagtttcttgcaaaggttgaatataatgatagatgttgcat |
25476021 |
T |
|
| Q |
203 |
ctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||| |||||||||| | ||||||||||||||| |||| ||||||| | |||||||| | |||||||||||| || ||||| |
|
|
| T |
25476020 |
ctgcattggaatatctccatcatggttcttcaatacctgtggttcattgcgatctaaagccttctaatgtcatgttggataaaaat |
25475935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 25311558 - 25311445
Alignment:
| Q |
3 |
gagctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtg |
102 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
25311558 |
gagctttgatgcagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtg |
25311459 |
T |
|
| Q |
103 |
atggagttcatgtc |
116 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
25311458 |
atggagttcatgtc |
25311445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #17
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 165 - 288
Target Start/End: Complemental strand, 25490594 - 25490471
Alignment:
| Q |
165 |
tttcttgcaaaggttaaatataatgatagcctttgcatctgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcct |
264 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||| |||| |||||||| | |||||||| |
|
|
| T |
25490594 |
tttcttgcaaaggttaaatataatgatagatgttgcatctgcattggaatatcttcatcatggttcttcaatgcctgtggttcattgtgatctaaagcct |
25490495 |
T |
|
| Q |
265 |
gccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||||||| ||||| |||||||| |
|
|
| T |
25490494 |
tccaatgtcttgttggatgaaaat |
25490471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0830 (Bit Score: 158; Significance: 4e-84; HSPs: 1)
Name: scaffold0830
Description:
Target: scaffold0830; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 288
Target Start/End: Original strand, 4035 - 4316
Alignment:
| Q |
7 |
tttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatgg |
106 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
4035 |
tttgatgtagaatgcaatgcaatgagaaatctacgacatcgaaatctggttaagattatcagcagttgttcaaatcttgatttcaaatcattggtgatgg |
4134 |
T |
|
| Q |
107 |
agttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatctgc |
206 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||| ||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
4135 |
agttcatgtcaaatggaagtgtagacaaatggttatattcaaataaataatgtataaatttcttgcaaaggttaaatataatgatagatgttgcatcagc |
4234 |
T |
|
| Q |
207 |
gttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
|||||||||| | ||||||||||||||| |||| ||||||| | |||||||| | |||||| ||||| |||||||| |
|
|
| T |
4235 |
attggaatatctacatcatggttcttcaatacctgtggttcattgagatctaaagccttcaaatgtcttgttggatgaaaat |
4316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 6e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 4 - 288
Target Start/End: Complemental strand, 10324411 - 10324127
Alignment:
| Q |
4 |
agctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtga |
103 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||||| ||||| ||||||| |||||||||| |||||||| |
|
|
| T |
10324411 |
agctttgatgcagaatgcaatgtaatgagaaatctacgacatcgaaatctggttaagattatcagtagttgttcaaatcatgatttcaaagcattggtgc |
10324312 |
T |
|
| Q |
104 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatc |
203 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||| |||||||||| ||| ||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
10324311 |
tggagttcatgtcaaatggaagtgtggacgattggttatattcagataactattgcttaaatttcttgcataggttaaatataatgatagatgttgcatc |
10324212 |
T |
|
| Q |
204 |
tgcgttggaatatcgtcttcatggttcttcaatgtatgtgtttcattgttagttaaagcctgccaatgtcatgttgtatgaaaat |
288 |
Q |
| |
|
||| |||||||||| | ||||||||||||||| ||| |||||||| | |||||||| | |||||| ||||| |||||||| |
|
|
| T |
10324211 |
tgcattggaatatctccatcatggttcttcaatacccgtggttcattgtgatctaaagccttctaatgtcttgttggatgaaaat |
10324127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 16885950 - 16886179
Alignment:
| Q |
7 |
tttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtgatgg |
106 |
Q |
| |
|
||||| ||||| |||||||||||| | | | | |||||||||||||| || || |||| | ||||| |||||| |||||||| ||||||||||||| |
|
|
| T |
16885950 |
tttgacgcagaatgcaatgcaatgcgcattcttcgacatcgaaatcttgttgaggttattacaagttgttcaaataaagatttcaagtcattggtgatgg |
16886049 |
T |
|
| Q |
107 |
agttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatctgc |
206 |
Q |
| |
|
|||| ||||||||||||||||| || | |||||||| || ||||||||||| || ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
16886050 |
agtttatgtcaaatggaagtgttgaaaaatggttatactcggataactattgtttagatttcttgcaaaggttgaatataatgatagatgttgcatctgc |
16886149 |
T |
|
| Q |
207 |
gttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
||||| |||| | ||||||||||||||| |
|
|
| T |
16886150 |
attggagtatctccatcatggttcttcaat |
16886179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 236
Target Start/End: Original strand, 5119225 - 5119457
Alignment:
| Q |
4 |
agctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtga |
103 |
Q |
| |
|
|||||||||||||| |||||||||||| | || | |||||| ||||||| || | ||||| || ||||| ||||||| |||||||||||| | |||| |
|
|
| T |
5119225 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatctctagtga |
5119324 |
T |
|
| Q |
104 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatc |
203 |
Q |
| |
|
||||||| ||||||||||||||||| || || |||||||| || ||||||||| | | ||||||||||||||| || |||||||||| | ||||| |
|
|
| T |
5119325 |
tggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatagatgtggcatc |
5119424 |
T |
|
| Q |
204 |
tgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
||| ||||| |||| || ||||||||||||||| |
|
|
| T |
5119425 |
tgcattggagtatcttcatcatggttcttcaat |
5119457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 193
Target Start/End: Original strand, 5101666 - 5101855
Alignment:
| Q |
4 |
agctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtga |
103 |
Q |
| |
|
|||||||||||||| |||||||||||| | || | |||||| ||||||| || | ||||| || ||||| ||||||| |||||||||||| | |||| |
|
|
| T |
5101666 |
agctttgatgcagaatgcaatgcaatgcgcaaccttcgacatagaaatctagttcaaattatgagtagttgttcaaatcctgatttcaaatctctagtga |
5101765 |
T |
|
| Q |
104 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatag |
193 |
Q |
| |
|
||||||| ||||||||||||||||| || || |||||||| || ||||||||| | | ||||||||||||||| || |||||||||| |
|
|
| T |
5101766 |
tggagtttatgtcaaatggaagtgtggaaagatggttatactctgataactattttttggatttcttgcaaaggttgaacataatgatag |
5101855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 5080308 - 5080076
Alignment:
| Q |
4 |
agctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtga |
103 |
Q |
| |
|
|||||| ||||||| |||||||| ||| | ||| | || ||||||||||| || |||| |||| |||||| |||||| || |||||| || ||||| | |
|
|
| T |
5080308 |
agctttaatgcagaatgcaatgctatgcgcaatcttcggcatcgaaatcttgttgagatcatcaccagttgttcaaatgttaatttcaggtctttggtaa |
5080209 |
T |
|
| Q |
104 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatc |
203 |
Q |
| |
|
||||||| |||||||||||||| | || | |||||||| | ||||||||| | || ||||||||||||| || | ||||||||||| | ||||| |
|
|
| T |
5080208 |
tggagttaatgtcaaatggaagcttggaaaaatggttatacactgataactattttttaggtttcttgcaaagattgactataatgatagatgtggcatc |
5080109 |
T |
|
| Q |
204 |
tgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
||| ||||| |||| || ||||||||||||||| |
|
|
| T |
5080108 |
tgcattggagtatcttcatcatggttcttcaat |
5080076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 4 - 236
Target Start/End: Complemental strand, 14412619 - 14412387
Alignment:
| Q |
4 |
agctttgatgcagagtgcaatgcaatgagaaatttacgacatcgaaatctggtaaagattatcagcagttgctcaaatcttgatttcaaatcattggtga |
103 |
Q |
| |
|
|||||||||||||| |||||||||||| | || | || ||| ||||||| || | |||||||| ||||| ||||||| |||||||||||| | |||| |
|
|
| T |
14412619 |
agctttgatgcagaatgcaatgcaatgcgcaacctccggcatagaaatctcgtccaaattatcagtagttgttcaaatcctgatttcaaatctctagtga |
14412520 |
T |
|
| Q |
104 |
tggagttcatgtcaaatggaagtgtagacagttggttatattcaaataactattgtctaagtttcttgcaaaggttaaatataatgatagcctttgcatc |
203 |
Q |
| |
|
||||||| |||||||| |||||| | || | |||||||| || |||||| ||| | | ||||||||||||||| || |||||||||| | ||||| |
|
|
| T |
14412519 |
tggagtttatgtcaaacggaagtttggaaaaatggttatactctaataacaattttttggatttcttgcaaaggttgaacataatgatagatgtggcatc |
14412420 |
T |
|
| Q |
204 |
tgcgttggaatatcgtcttcatggttcttcaat |
236 |
Q |
| |
|
||| ||||| |||| | ||||||||||||||| |
|
|
| T |
14412419 |
tgcattggagtatctccatcatggttcttcaat |
14412387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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