View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_low_20 (Length: 273)

Name: NF14934_low_20
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_low_20
NF14934_low_20
[»] chr4 (23 HSPs)
chr4 (77-262)||(50385217-50385402)
chr4 (18-75)||(51265436-51265493)
chr4 (18-76)||(6271692-6271750)
chr4 (18-76)||(23444359-23444417)
chr4 (18-69)||(3862636-3862687)
chr4 (18-69)||(3871393-3871444)
chr4 (18-69)||(6271792-6271843)
chr4 (18-69)||(42375100-42375151)
chr4 (18-74)||(30861864-30861920)
chr4 (18-69)||(30709990-30710041)
chr4 (18-64)||(44380020-44380066)
chr4 (18-64)||(47661932-47661978)
chr4 (18-62)||(5048890-5048934)
chr4 (20-64)||(19184505-19184549)
chr4 (18-69)||(35682163-35682214)
chr4 (38-77)||(42375008-42375047)
chr4 (18-69)||(53954700-53954751)
chr4 (18-60)||(23444275-23444317)
chr4 (19-69)||(26186105-26186155)
chr4 (18-52)||(30861796-30861830)
chr4 (38-76)||(47404686-47404724)
chr4 (39-76)||(31430560-31430597)
chr4 (25-62)||(44379934-44379971)
[»] chr7 (18 HSPs)
chr7 (18-76)||(34854785-34854843)
chr7 (18-81)||(38975790-38975853)
chr7 (18-76)||(11016859-11016917)
chr7 (18-74)||(45231940-45231996)
chr7 (18-69)||(27028725-27028776)
chr7 (18-76)||(41018318-41018376)
chr7 (18-76)||(48000684-48000742)
chr7 (18-74)||(4290537-4290593)
chr7 (18-69)||(4290635-4290686)
chr7 (18-69)||(11016959-11017010)
chr7 (18-69)||(41945945-41945996)
chr7 (18-69)||(42628385-42628436)
chr7 (19-76)||(15027532-15027589)
chr7 (18-69)||(48000827-48000878)
chr7 (18-64)||(27028883-27028929)
chr7 (39-76)||(29053416-29053453)
chr7 (25-69)||(38975902-38975946)
chr7 (18-62)||(41945859-41945903)
[»] chr3 (14 HSPs)
chr3 (18-77)||(41752953-41753012)
chr3 (18-69)||(41753054-41753105)
chr3 (18-76)||(51046163-51046221)
chr3 (18-69)||(1801443-1801494)
chr3 (18-69)||(50524792-50524843)
chr3 (18-76)||(43139799-43139857)
chr3 (18-69)||(30734492-30734543)
chr3 (18-69)||(45103106-45103157)
chr3 (18-60)||(18321657-18321699)
chr3 (18-76)||(47492137-47492195)
chr3 (18-63)||(33689179-33689224)
chr3 (18-62)||(30580846-30580890)
chr3 (19-63)||(55223235-55223279)
chr3 (39-76)||(1801597-1801634)
[»] chr8 (17 HSPs)
chr8 (18-76)||(8243478-8243536)
chr8 (18-76)||(22649835-22649893)
chr8 (18-80)||(35441059-35441121)
chr8 (18-76)||(5033151-5033209)
chr8 (18-75)||(10086748-10086805)
chr8 (18-77)||(2581814-2581873)
chr8 (18-69)||(5667094-5667145)
chr8 (18-76)||(33841681-33841739)
chr8 (18-69)||(5033251-5033302)
chr8 (18-77)||(5667187-5667246)
chr8 (18-62)||(10086847-10086891)
chr8 (21-69)||(33841588-33841636)
chr8 (18-69)||(35440966-35441017)
chr8 (19-62)||(39851046-39851089)
chr8 (19-69)||(35031706-35031756)
chr8 (18-64)||(43844559-43844605)
chr8 (18-63)||(34229644-34229689)
[»] chr6 (8 HSPs)
chr6 (18-76)||(24975742-24975800)
chr6 (18-69)||(24587458-24587509)
chr6 (18-63)||(17750906-17750950)
chr6 (18-63)||(24618604-24618649)
chr6 (38-76)||(10521950-10521988)
chr6 (19-64)||(13043548-13043593)
chr6 (18-76)||(551255-551313)
chr6 (18-60)||(12343190-12343232)
[»] chr5 (22 HSPs)
chr5 (18-76)||(19655148-19655206)
chr5 (19-76)||(19598322-19598379)
chr5 (18-82)||(291081-291145)
chr5 (18-69)||(2953280-2953331)
chr5 (18-69)||(19655248-19655299)
chr5 (18-64)||(28819007-28819053)
chr5 (18-63)||(12913806-12913851)
chr5 (18-63)||(12913893-12913938)
chr5 (18-69)||(291187-291238)
chr5 (18-69)||(2093934-2093985)
chr5 (18-69)||(16971234-16971285)
chr5 (18-69)||(29699457-29699508)
chr5 (19-63)||(32485640-32485684)
chr5 (18-69)||(3899929-3899980)
chr5 (18-69)||(13312261-13312312)
chr5 (21-63)||(2356364-2356406)
chr5 (38-76)||(2953197-2953235)
chr5 (18-60)||(3180150-3180191)
chr5 (18-76)||(30117918-30117976)
chr5 (31-64)||(39777053-39777086)
chr5 (39-75)||(3899839-3899875)
chr5 (18-58)||(16439146-16439186)
[»] chr1 (22 HSPs)
chr1 (18-76)||(29179687-29179745)
chr1 (18-76)||(46931987-46932045)
chr1 (18-80)||(48994007-48994069)
chr1 (18-76)||(37155036-37155094)
chr1 (18-76)||(44706874-44706932)
chr1 (23-76)||(48498405-48498458)
chr1 (18-69)||(48993914-48993965)
chr1 (18-69)||(49444910-49444961)
chr1 (18-76)||(5995359-5995417)
chr1 (18-60)||(28395643-28395685)
chr1 (19-64)||(15220902-15220947)
chr1 (18-70)||(36290497-36290549)
chr1 (18-69)||(5995459-5995510)
chr1 (18-69)||(9884838-9884889)
chr1 (18-69)||(33219663-33219714)
chr1 (18-69)||(46932072-46932122)
chr1 (18-63)||(9157313-9157358)
chr1 (18-63)||(21630045-21630090)
chr1 (18-59)||(32540755-32540796)
chr1 (39-76)||(49445013-49445050)
chr1 (40-76)||(8337954-8337990)
chr1 (18-62)||(29179601-29179645)
[»] chr2 (20 HSPs)
chr2 (18-77)||(29508781-29508840)
chr2 (22-76)||(16514414-16514468)
chr2 (18-78)||(9173071-9173131)
chr2 (18-66)||(14229353-14229401)
chr2 (18-64)||(6217226-6217272)
chr2 (18-62)||(33018635-33018679)
chr2 (18-69)||(32545878-32545929)
chr2 (18-64)||(14892350-14892396)
chr2 (32-78)||(37632979-37633025)
chr2 (18-63)||(14470595-14470640)
chr2 (20-69)||(29508687-29508736)
chr2 (18-69)||(16514514-16514565)
chr2 (26-69)||(32545783-32545826)
chr2 (18-69)||(37961796-37961847)
chr2 (18-69)||(38933677-38933728)
chr2 (39-76)||(6217326-6217363)
chr2 (39-72)||(15011382-15011415)
chr2 (18-63)||(24115923-24115968)
chr2 (18-63)||(24116010-24116055)
chr2 (40-76)||(38933586-38933622)
[»] scaffold0161 (2 HSPs)
scaffold0161 (18-76)||(27310-27368)
scaffold0161 (18-69)||(27217-27268)
[»] scaffold0586 (2 HSPs)
scaffold0586 (18-63)||(7137-7181)
scaffold0586 (18-63)||(7050-7095)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-69)||(49700-49751)
[»] scaffold0180 (1 HSPs)
scaffold0180 (18-63)||(19125-19170)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 77 - 262
Target Start/End: Original strand, 50385217 - 50385402
Alignment:
Q  77 atataaggacaccatatgagttgataggagtgagagccccaatattcaagaaagatccaatcccaggagaattatttcttttccaacttcccactttacc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50385217 atataaggacaccatatgagttgataggagtgagagccccaatattcaagaaagatccaatcccaggagaattatttcttttccaacttcccactttacc 50385316  T
Q  177 ttatatatctattatattacataatcacttgctagcttcttttcttatccaaaacaagtagctagctagcttctttttagggagaa 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50385317 ttatatatctattatattacataatcacttgctagcttcttttcttatccaaaacaagtagctagctagcttctttttagggagaa 50385402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 51265493 - 51265436
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttc 75  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    
T  51265493 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttc 51265436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 6271750 - 6271692
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||||    
T  6271750 cattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttcc 6271692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 23444359 - 23444417
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  23444359 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 23444417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3862636 - 3862687
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  3862636 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3862687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3871393 - 3871444
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  3871393 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacctaagt 3871444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 6271792 - 6271843
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| |||||||||||||| |||||||||||||||||||| ||||    
T  6271792 cattgtgattggccaatgtcaccaatatcactcaactctatgtcacccaagt 6271843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 42375100 - 42375151
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||| ||||    
T  42375100 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcacccaagt 42375151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 30861864 - 30861920
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtatttt 74  Q
    ||||||||||| |||||||||||||| |||  ||||||||||||||| |||||||||    
T  30861864 cattgtgattggccaatgtcaccaatatcatccaactctatgtcacccaagtatttt 30861920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 30709990 - 30710041
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||| ||||    
T  30709990 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30710041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 44380020 - 44380066
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||    
T  44380020 cattgtgattggtcaatatcaccaatgtcactcaactctatgtcacc 44380066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 47661932 - 47661978
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||  |||||||||||||||||| |||||||||||||||    
T  47661932 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacc 47661978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 5048890 - 5048934
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||| |||||||||||||||| ||||||||| |||||||||||||    
T  5048890 cattatgattgaccaatgtcatcaatgtcacccaactctatgtca 5048934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 19184549 - 19184505
Alignment:
Q  20 ttgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||    
T  19184549 ttgtgattgaccaatgtcatcaatgtcacttaactctatctcacc 19184505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 35682214 - 35682163
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| |||||||||||||| ||||  |||||||||||||| ||||    
T  35682214 cattgtgattggccaatgtcaccaatatcacctaactctatgtcacccaagt 35682163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 38 - 77
Target Start/End: Complemental strand, 42375047 - 42375008
Alignment:
Q  38 accaatgtcactcaactctatgtcaccaaagtattttcca 77  Q
    ||||||||||| ||||||||||||||| ||||||||||||    
T  42375047 accaatgtcacccaactctatgtcacccaagtattttcca 42375008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 53954700 - 53954751
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||| |||||    
T  53954700 cattgtaattggacaatgtcaccaatgtcacccaactctatgtcacaaaagt 53954751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 23444317 - 23444275
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgt 60  Q
    |||||||||||  |||||||||||||||||| |||||||||||    
T  23444317 cattgtgattggtcaatgtcaccaatgtcacccaactctatgt 23444275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 26186105 - 26186155
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||| ||||||||| |||||| || ||||||||||||||| ||||    
T  26186105 attgtgattggccaatgtcatcaatgttacccaactctatgtcacccaagt 26186155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 30861830 - 30861796
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaa 52  Q
    ||||||||||| |||||||||||||||||||||||    
T  30861830 cattgtgattggccaatgtcaccaatgtcactcaa 30861796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 47404686 - 47404724
Alignment:
Q  38 accaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  47404686 accaatgtcacccaactctatgtcacccaagtattttcc 47404724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 31430560 - 31430597
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  31430560 ccaatgtcacccaactctatgtcacccaagtattttcc 31430597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 62
Target Start/End: Complemental strand, 44379971 - 44379934
Alignment:
Q  25 attgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  44379971 attggccaatgtcgccaatgtcactcaactctatgtca 44379934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 34854785 - 34854843
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||    
T  34854785 cattgtgattgaccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 34854843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 38975853 - 38975790
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttccatata 81  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||    
T  38975853 cattgtgattgaccaatgttaccaatgtcacccaactctatgtcacccaagtattttccgtata 38975790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 11016917 - 11016859
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  11016917 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 11016859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 74
Target Start/End: Original strand, 45231940 - 45231996
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtatttt 74  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||    
T  45231940 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtatttt 45231996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27028776 - 27028725
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  27028776 cattgtgattgtccaatgtcaccaatgtcactcaactatatgtcaccaaagt 27028725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 41018318 - 41018376
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||    
T  41018318 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 41018376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 48000742 - 48000684
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||||| |||||||||||||||||| |||||| |||||||| |||||||||||    
T  48000742 cattgtgattgatcaatgtcaccaatgtcacccaactcaatgtcacccaagtattttcc 48000684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 4290593 - 4290537
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtatttt 74  Q
    ||||||||||||||||| |||||||| |||| ||||||||||||||| |||||||||    
T  4290593 cattgtgattgaccaatatcaccaatatcacccaactctatgtcacccaagtatttt 4290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 4290635 - 4290686
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||    
T  4290635 cattgtgattggccaatgtcaccaatgtcacccaactgtatgtcacccaagt 4290686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 11016959 - 11017010
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  11016959 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 11017010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 41945945 - 41945996
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||||||||| | ||||||||||||||||| ||||||||| ||||    
T  41945945 cattgtgattgaccaatattaccaatgtcactcaactttatgtcacccaagt 41945996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 42628385 - 42628436
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| ||||    
T  42628385 cattgtgattggccaatatcaccaatgtcacccaactctatgtcacccaagt 42628436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 15027589 - 15027532
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||  |||||||||||||||||  ||||||||||| ||| |||||||||||    
T  15027589 attgtgattggtcaatgtcaccaatgtcaaacaactctatgttacccaagtattttcc 15027532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 48000827 - 48000878
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||| ||| ||||    
T  48000827 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtgacccaagt 48000878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 27028883 - 27028929
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||||||||||||||||  |||| ||| |||||||||||    
T  27028883 cattgtgattgaccaatgtcaccaacatcacccaagtctatgtcacc 27028929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 29053416 - 29053453
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  29053416 ccaatgtcacccaactctatgtcacccaagtattttcc 29053453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 38975902 - 38975946
Alignment:
Q  25 attgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||| ||||||||||||||||||  |||||||||||||| ||||    
T  38975902 attgatcaatgtcaccaatgtcacctaactctatgtcacctaagt 38975946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 41945903 - 41945859
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||| |||||||| ||||||| ||||||||||||| |||||||||    
T  41945903 cattatgattgactaatgtcatcaatgtcactcaattctatgtca 41945859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 41753012 - 41752953
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcca 77  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41753012 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcca 41752953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 41753054 - 41753105
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  41753054 cattgtgattggccaatgtcaccaatgtcactcaactctatgtcacccaagt 41753105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 51046163 - 51046221
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  51046163 cattgtgattggccaatgtcaccaatgtcatccaactctatgtcacccaagtattttcc 51046221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 1801494 - 1801443
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  1801494 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 1801443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 50524792 - 50524843
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||||| ||||    
T  50524792 cattgtgattgactaatatcaccaatgtcactcaactctatgtcacccaagt 50524843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 43139799 - 43139857
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  43139799 cattgttattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 43139857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 30734492 - 30734543
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||| ||||    
T  30734492 cattgtgattggccaatgtcaccaatgtcacctaactctatgtcacccaagt 30734543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 45103157 - 45103106
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| |||| ||||||||||||| ||||||||||||||| ||||    
T  45103157 cattgtgattgatcaatatcaccaatgtcacccaactctatgtcacccaagt 45103106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 18321699 - 18321657
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgt 60  Q
    |||||||||||||||||||||||||| |||| |||||||||||    
T  18321699 cattgtgattgaccaatgtcaccaatatcacccaactctatgt 18321657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 47492137 - 47492195
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||| | ||||||||||| ||||||||||||||| || ||||||||    
T  47492137 cattgtgattggccaatatgaccaatgtcacccaactctatgtcacccaactattttcc 47492195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 33689224 - 33689179
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||    
T  33689224 cattgtgattgaccaatatcatcaatgtcacccaactctatgtcac 33689179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 30580846 - 30580890
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||    
T  30580846 cattgtgattgaccaatgtcacaaatgtcacccaattctatgtca 30580890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 55223279 - 55223235
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||||||| |||||||||||||  |||||||||||||    
T  55223279 attgtgattgaccaatatcaccaatgtcacctaactctatgtcac 55223235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 1801597 - 1801634
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  1801597 ccaatgtcacccaactctatgtcacccaagtattttcc 1801634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 8243478 - 8243536
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||    
T  8243478 cattgtgattgaccaacgtcaccaatgtcacccaactctatgtcacccaagtattttcc 8243536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 22649893 - 22649835
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||    
T  22649893 cattgtgattagccaatgtcaccaatgtcactcaactctatgtcacccaagtattttcc 22649835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 35441059 - 35441121
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttccatat 80  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||| ||||    
T  35441059 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttctatat 35441121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5033209 - 5033151
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||    
T  5033209 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 5033151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 10086805 - 10086748
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttc 75  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||| ||||||||||    
T  10086805 cattgtgattgaccaatgtcactaatgtcacccaattctatgtcacccaagtattttc 10086748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 2581873 - 2581814
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcca 77  Q
    ||||||||||| ||||||||| ||||||||| ||| ||||||||||| ||||||||||||    
T  2581873 cattgtgattggccaatgtcaacaatgtcacccaattctatgtcacccaagtattttcca 2581814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 5667145 - 5667094
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| ||||    
T  5667145 cattgtgattgaccaatgtcaccaatgtcatccaactctatgtcacccaagt 5667094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 33841681 - 33841739
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||| ||||||  |||||||||||||||||| ||||||||||||||| |||||||||||    
T  33841681 cattctgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 33841739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 5033251 - 5033302
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  5033251 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 5033302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 5667187 - 5667246
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcca 77  Q
    |||||| |||| ||||||||||||||||||   |||||||||||||| ||||||||||||    
T  5667187 cattgtaattggccaatgtcaccaatgtcatcaaactctatgtcacccaagtattttcca 5667246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 10086847 - 10086891
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||||||||||  |||||||||||||||||| |||||||||||||    
T  10086847 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtca 10086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 33841636 - 33841588
Alignment:
Q  21 tgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  33841636 tgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 33841588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 35441017 - 35440966
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| ||||    
T  35441017 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 35440966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 39851046 - 39851089
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    ||||||||||  |||||||||||||||||||||||| |||||||    
T  39851046 attgtgattggtcaatgtcaccaatgtcactcaactttatgtca 39851089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 35031706 - 35031756
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||| ||||||||| |||| ||| |||||||||||||||||||| ||||    
T  35031706 attgtggttgaccaatatcacaaatatcactcaactctatgtcacctaagt 35031756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 43844559 - 43844605
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||| |||| ||||||||||||  |||||||||||||||    
T  43844559 cattgtgattgatcaatatcaccaatgtcatccaactctatgtcacc 43844605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 34229689 - 34229644
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||||  ||||||| |||||||| ||||||||||||||    
T  34229689 cattgtgattgactcatgtcactaatgtcacccaactctatgtcac 34229644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 7e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 24975800 - 24975742
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||    
T  24975800 cattgtgattgaccaatgtcaccaatgtcagccaactctatgtcacccaagtattttcc 24975742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 24587509 - 24587458
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||| ||||    
T  24587509 cattgtgattgaccaatgtcactaatgtcacccaactctatgtcacctaagt 24587458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 17750950 - 17750906
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  17750950 cattgtgattgaccaatgtcaccaatgtca-tcaactctatgtcac 17750906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24618649 - 24618604
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||    
T  24618649 cattgtgattgatcaatgtcaccaatgtcacccaactctatgtcac 24618604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 10521950 - 10521988
Alignment:
Q  38 accaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  10521950 accaatgtcactcaactctatgtcaccatagtattttcc 10521988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 13043548 - 13043593
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||  |||||||||||||| ||||||||||||||||||||    
T  13043548 attgtgattagccaatgtcaccaatatcactcaactctatgtcacc 13043593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 551255 - 551313
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| |||||||||||||| |||  ||| ||||||||||| || ||||||||    
T  551255 cattgtgattggccaatgtcaccaatatcatccaattctatgtcacccaaatattttcc 551313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 12343190 - 12343232
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgt 60  Q
    ||||||||||| |||||||||||||| |||| |||||||||||    
T  12343190 cattgtgattggccaatgtcaccaatctcacccaactctatgt 12343232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 19655206 - 19655148
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  19655206 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 19655148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 19598379 - 19598322
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||    
T  19598379 attgtgattgaccaatgtcaccaatgttacccaactctatgtcacccaagtattttcc 19598322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 291145 - 291081
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttccatataa 82  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||  ||||||||||| |||||    
T  291145 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcactcaagtattttccttataa 291081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 2953280 - 2953331
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| ||||    
T  2953280 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagt 2953331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 19655248 - 19655299
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||||||||||||||||||| ||||    
T  19655248 cattgtgattggacaatgtcaccaatgtcactcaactctatgtcacccaagt 19655299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 28819007 - 28819053
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||    
T  28819007 cattatgattgaccaatgtcaccaatatcactcaactctatgtcacc 28819053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 12913851 - 12913806
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||    
T  12913851 cattgtgattggccaatgtcaccaatgtcactcaactatatgtcac 12913806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 12913893 - 12913938
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||    
T  12913893 cattgtgattgaccaatatcaccaatgtcacccaactctatgtcac 12913938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 291187 - 291238
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| |||||||||||||||||| ||||||||| ||||| ||||    
T  291187 cattgtgattgatcaatgtcaccaatgtcacccaactctatatcacccaagt 291238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 2093985 - 2093934
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| ||||||||||||| |||| ||||||||||||||| ||||    
T  2093985 cattgtgattgatcaatgtcaccaatatcacccaactctatgtcacccaagt 2093934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 16971234 - 16971285
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  16971234 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 16971285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 29699457 - 29699508
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||| ||||    
T  29699457 cattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagt 29699508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 32485640 - 32485684
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||    
T  32485640 attgtgattgatcaatgtcaccaatgtcacccaactctgtgtcac 32485684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 3899929 - 3899980
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| |||||||| |||||| ||||    
T  3899929 cattgtgattggtcaatgtcaccaatgtcacccaactctaagtcacccaagt 3899980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 13312312 - 13312261
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| |||||||| |||||||||  |||||||||||||| ||||    
T  13312312 cattgtgattgatcaatgtcatcaatgtcacctaactctatgtcacctaagt 13312261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 2356364 - 2356406
Alignment:
Q  21 tgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||| ||||||||||||||||||  ||||||||||||||    
T  2356364 tgtgattggccaatgtcaccaatgtcatccaactctatgtcac 2356406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 76
Target Start/End: Complemental strand, 2953235 - 2953197
Alignment:
Q  38 accaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||| |||||||||||    
T  2953235 accaatgtcacccaactctatgtcacccaagtattttcc 2953197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 3180150 - 3180191
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgt 60  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  3180150 cattgtgattgaccaatgtcaccaatgttac-caactctatgt 3180191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 30117918 - 30117976
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||| |||||||||||| ||||||||||||  ||||||||||||| | || ||||||||    
T  30117918 cattatgattgaccaatatcaccaatgtcatccaactctatgtcatccaaatattttcc 30117976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 39777086 - 39777053
Alignment:
Q  31 caatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||||||||| |||||||||||||||    
T  39777086 caatgtcaccaatgtcacccaactctatgtcacc 39777053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 3899875 - 3899839
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttc 75  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  3899875 ccaatgtcacccaactctatgtcacccaagtattttc 3899839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 16439186 - 16439146
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctat 58  Q
    |||||||||||||||||||||||||| | || |||||||||    
T  16439186 cattgtgattgaccaatgtcaccaatattacccaactctat 16439146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 29179687 - 29179745
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  29179687 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 29179745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 46932045 - 46931987
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  46932045 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 46931987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 48994007 - 48994069
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttccatat 80  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  48994007 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagtattttccatat 48994069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 37155094 - 37155036
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| |||||||||||||||||||  |||||||||||||| |||||||||||    
T  37155094 cattgtgattggccaatgtcaccaatgtcaccaaactctatgtcacccaagtattttcc 37155036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 44706874 - 44706932
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||| || ||||||||    
T  44706874 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacccaaatattttcc 44706932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 48498458 - 48498405
Alignment:
Q  23 tgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||||||||| |||||||| ||||||||||||||| |||||||||||    
T  48498458 tgattgaccaatgtcacaaatgtcacccaactctatgtcacccaagtattttcc 48498405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 48993965 - 48993914
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  48993965 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcacccaagt 48993914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 49444961 - 49444910
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| | |||||||||||||||| ||||||||||||||| ||||    
T  49444961 cattgtgattgatcgatgtcaccaatgtcacccaactctatgtcacccaagt 49444910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 5995417 - 5995359
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||||| ||||||||||   |||||||||||||| |||||||||||    
T  5995417 cattgtgattggccaatgttaccaatgtcatcaaactctatgtcacccaagtattttcc 5995359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 28395685 - 28395643
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgt 60  Q
    |||||||||||  ||||||||||||||||||||||||||||||    
T  28395685 cattgtgattggtcaatgtcaccaatgtcactcaactctatgt 28395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 15220902 - 15220947
Alignment:
Q  19 attgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||| ||||| ||||||||||||| |||||||||||||||    
T  15220902 attgtgattggccaatatcaccaatgtcacccaactctatgtcacc 15220947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 36290497 - 36290549
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagta 70  Q
    |||||||||||  ||||| |||||||||||| ||||||||||||||| |||||    
T  36290497 cattgtgattggtcaatgccaccaatgtcacccaactctatgtcacccaagta 36290549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 5995459 - 5995510
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||  ||||||||||||||| ||||    
T  5995459 cattgtgattggtcaatgtcaccaatgtcatccaactctatgtcacccaagt 5995510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 9884889 - 9884838
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||| |||||||||||||||||||||||  | | |||||||||||||||    
T  9884889 cattgtggttgaccaatgtcaccaatgtcaccaaccactatgtcaccaaagt 9884838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 33219663 - 33219714
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||| |||||||||||||||||  ||||||||||| ||| ||||    
T  33219663 cattgtgattgatcaatgtcaccaatgtcatccaactctatgttacccaagt 33219714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 46932072 - 46932122
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  46932072 cattgtgattggtcaatgtcaccaatgtcac-caactctatgtcacccaagt 46932122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9157358 - 9157313
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||  |||||| ||||||||||| ||||||||||||||    
T  9157358 cattgtgattggtcaatgttaccaatgtcacccaactctatgtcac 9157313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 21630090 - 21630045
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||  |||||||||||||||||| ||||| ||||||||    
T  21630090 cattgtgattggtcaatgtcaccaatgtcacccaactttatgtcac 21630045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 32540796 - 32540755
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatg 59  Q
    ||||||||||| |||||| |||||||||||| ||||||||||    
T  32540796 cattgtgattggccaatgccaccaatgtcacccaactctatg 32540755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 49445013 - 49445050
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  49445013 ccaatgtcacccaactctatgtcacccaagtattttcc 49445050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 8337954 - 8337990
Alignment:
Q  40 caatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  8337954 caatgtcacccaactctatgtcacccaagtattttcc 8337990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 29179645 - 29179601
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    |||||||||||  || ||||||||||||||| |||||||||||||    
T  29179645 cattgtgattggtcagtgtcaccaatgtcacccaactctatgtca 29179601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 29508781 - 29508840
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcca 77  Q
    ||||||||||| |||||||||||||| |||| ||||||||||||||| ||||||||||||    
T  29508781 cattgtgattggccaatgtcaccaatatcacccaactctatgtcacccaagtattttcca 29508840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 16514468 - 16514414
Alignment:
Q  22 gtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||    
T  16514468 gtgattggccaatgtcaccaatgtcacccaactctatgtcacccaagtattttcc 16514414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 9173071 - 9173131
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttccat 78  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||||||| || ||||||||||    
T  9173071 cattgtgattggccaatatcaccaatgtcacccaactctatgtcacctaaatattttccat 9173131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 14229401 - 14229353
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaa 66  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14229401 cattgtgattgaccaatgtcaccaatgtcaccgaactctatgtcaccaa 14229353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 6217272 - 6217226
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||    
T  6217272 cattgtgattggccaatgtcaccaatgtcacccaactctatgtcacc 6217226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 33018635 - 33018679
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtca 62  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||    
T  33018635 cattgtgattgaccaatatcaccaatgtcacccaactctatgtca 33018679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 32545878 - 32545929
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||| |||||| |||||||||||||||||||| |||||||||||||| ||||    
T  32545878 cattatgattggccaatgtcaccaatgtcactaaactctatgtcacccaagt 32545929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 14892350 - 14892396
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcacc 64  Q
    |||||||||||| |||||||||||||||||  |||||||||||||||    
T  14892350 cattgtgattgatcaatgtcaccaatgtcatccaactctatgtcacc 14892396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 78
Target Start/End: Complemental strand, 37633025 - 37632979
Alignment:
Q  32 aatgtcaccaatgtcactcaactctatgtcaccaaagtattttccat 78  Q
    |||||||||||||||||  |||||||||||||| |||||||||||||    
T  37633025 aatgtcaccaatgtcaccaaactctatgtcacccaagtattttccat 37632979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 14470640 - 14470595
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||  |||||||||||||||||| ||||||||||||||    
T  14470640 cattgtgattggtcaatgtcaccaatgtcacccaactctatgtcac 14470595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 29508736 - 29508687
Alignment:
Q  20 ttgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||  |||||||||||||||||| ||||||||||||||| ||||    
T  29508736 ttgtgattggtcaatgtcaccaatgtcacccaactctatgtcacctaagt 29508687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 16514514 - 16514565
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  ||||||||||||| |||| ||||||||||||||| ||||    
T  16514514 cattgtgattggtcaatgtcaccaatctcacccaactctatgtcacccaagt 16514565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 69
Target Start/End: Complemental strand, 32545826 - 32545783
Alignment:
Q  26 ttgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||||||||||||||  |||||||||||||| ||||    
T  32545826 ttgaccaatgtcaccaatgtcacctaactctatgtcacctaagt 32545783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 37961796 - 37961847
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  ||||||||| ||| |||||||||||||||||||| ||||    
T  37961796 cattgtgattggtcaatgtcacaaatatcactcaactctatgtcacccaagt 37961847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 38933677 - 38933728
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||| |||||| |||| |||||||||||||| ||||||||||||||| ||||    
T  38933677 cattatgattggccaacgtcaccaatgtcacccaactctatgtcacccaagt 38933728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 76
Target Start/End: Original strand, 6217326 - 6217363
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  6217326 ccaatgtcacccaactctatgtcacccaagtattttcc 6217363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 15011382 - 15011415
Alignment:
Q  39 ccaatgtcactcaactctatgtcaccaaagtatt 72  Q
    |||||||||||||||||||||||||| |||||||    
T  15011382 ccaatgtcactcaactctatgtcacccaagtatt 15011415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 24115968 - 24115923
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||| ||||||| |||||||| |||||||||||| ||||    
T  24115968 cattgtgattggccaatgttaccaatgtgactcaactctatctcac 24115923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 24116010 - 24116055
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||||||||| |||| |||| ||| ||||||||||||||    
T  24116010 cattgtgattgaccaatatcactaatggcacccaactctatgtcac 24116055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Complemental strand, 38933622 - 38933586
Alignment:
Q  40 caatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||| ||||||||||||||| |||||||||||    
T  38933622 caatgtcacccaactctatgtcacctaagtattttcc 38933586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 27310 - 27368
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagtattttcc 76  Q
    ||||||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||||||    
T  27310 cattgtgattggccaatatcaccaatgtcacccaactctatatcacccaagtattttcc 27368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 27268 - 27217
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    ||||||||||| ||||| |||| |||||||| ||||||||||||||| ||||    
T  27268 cattgtgattggccaatatcactaatgtcacccaactctatgtcacccaagt 27217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 7137 - 7181
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  7137 cattgtgattggccaatgtcaccaatgtcac-caactctatgtcac 7181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 7095 - 7050
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    ||||||||||| | ||| ||||||||||||| ||||||||||||||    
T  7095 cattgtgattggctaatatcaccaatgtcacccaactctatgtcac 7050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 49751 - 49700
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcaccaaagt 69  Q
    |||||||||||  |||||||| ||||||||| ||||||||||||||| ||||    
T  49751 cattgtgattggtcaatgtcatcaatgtcacccaactctatgtcacccaagt 49700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 19170 - 19125
Alignment:
Q  18 cattgtgattgaccaatgtcaccaatgtcactcaactctatgtcac 63  Q
    |||||||||||| |||| ||| ||||||||| ||||||||||||||    
T  19170 cattgtgattgatcaatatcatcaatgtcacccaactctatgtcac 19125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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