View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_low_21 (Length: 273)
Name: NF14934_low_21
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 820951 - 820730
Alignment:
| Q |
18 |
gtatgcgtagaaataccaattacaagcggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaa |
117 |
Q |
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| T |
820951 |
gtatgcgtagaaataccaattacaagcggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaa |
820852 |
T |
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| Q |
118 |
cttcccaagtttattatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctt |
217 |
Q |
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| T |
820851 |
ctttccaagtttattatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataatgtctt |
820752 |
T |
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| Q |
218 |
tcaaatgtagtgttttgagtga |
239 |
Q |
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| T |
820751 |
tcaaatgtagtgttttgagtga |
820730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 44 - 183
Target Start/End: Original strand, 965765 - 965904
Alignment:
| Q |
44 |
cggtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaacttcccaagtttattatattagatag |
143 |
Q |
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| T |
965765 |
cggtaatatctgctctgttcaactttcttagcattgagctgttttcaaagtcatcaaaagaatgatgagtgtaacatatgaagaagtttatgttagatag |
965864 |
T |
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| Q |
144 |
ttgaagatcttctagaactggacatgcgtctagaagcatc |
183 |
Q |
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| T |
965865 |
ttgaaggtcttcaagaactggacatccatctacaagcatc |
965904 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 975036 - 975226
Alignment:
| Q |
46 |
gtaatatctgctctgttcaactttcttaacattgagctgctttcaaagtcatcaaaataatcacgagtgtaacttcccaagtttattatattagatagtt |
145 |
Q |
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| T |
975036 |
gtaatatctgctctgttcaatttttttaacattgagctgctttcaaagtcatcaagagaatgatgactctgacgtgtcatgt---atatataacatagtt |
975132 |
T |
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| Q |
146 |
gaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgttttgagtga |
239 |
Q |
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| T |
975133 |
gaagatcttcaagaactggacatccatctagaagcatcataaaatcacgttgctgatcaaagtaaatctctttcaaatgtagggtttttagtga |
975226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 810548 - 810512
Alignment:
| Q |
237 |
tgaacaaagaatatagcatgaattctataatacaact |
273 |
Q |
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| T |
810548 |
tgaacaaagaatatagcatgaattctataatacaact |
810512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 239
Target Start/End: Complemental strand, 409721 - 409613
Alignment:
| Q |
131 |
ttatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaagtctttcaaatgtagtgt |
230 |
Q |
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| T |
409721 |
ttatattagacagttgaagatcttgaagaactggacatccatctagaagcataaaaaaatcagattgttgatggaagtagaagtctttcaaatgtagggt |
409622 |
T |
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| Q |
231 |
tttgagtga |
239 |
Q |
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| T |
409621 |
tttgagtga |
409613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 1402898 - 1402791
Alignment:
| Q |
132 |
tatattagatagttgaagatcttctagaactggacatgcgtctagaagcatcatcagttgacattgttggtcaaagataaa-gtctttcaaatgtagtgt |
230 |
Q |
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| T |
1402898 |
tatattagatagttgaagatcttcaagaagtggacatgcatccagaagaaacgtaaattcatgttgatgat-gaagataaatgtctttcaaatgtagtgt |
1402800 |
T |
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| Q |
231 |
tttgagtga |
239 |
Q |
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| T |
1402799 |
tttgagtga |
1402791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 237 - 273
Target Start/End: Complemental strand, 714402 - 714366
Alignment:
| Q |
237 |
tgaacaaagaatatagcatgaattctataatacaact |
273 |
Q |
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| T |
714402 |
tgaacaaagaatatagcatgaattctataatacaact |
714366 |
T |
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