View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14934_low_3 (Length: 535)
Name: NF14934_low_3
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14934_low_3 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0039 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 19 - 535
Target Start/End: Original strand, 33806728 - 33807244
Alignment:
| Q |
19 |
attaagaactaactcagactatcacccatttttgcttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggaccctg |
118 |
Q |
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|||||||||||||| |||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806728 |
attaagaactaacttagaccatcacccaattttccttgattttgaagccactcaaaacaagtttgttacctagtttaaatttcaataaatgtggacccta |
33806827 |
T |
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| Q |
119 |
catacagactatagaaacattgtaacctcaacctggaattttaatgtagttggttgtcccatgttcattctatcctaaaatctccagatgcgcaaaataa |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
33806828 |
catacagactatagaaacattgtaacctcaacctagaattttaatgtagttggttgtcccatgttcattctatcctaaaagctccagatgctcaaaataa |
33806927 |
T |
|
| Q |
219 |
accttagaaactagaacaaagatggctttggtaatattcaccaagttgttaaagaagcagaagataaattacatgatatctgacaacaaatttaaacctc |
318 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33806928 |
accttagaaactggaacaaagatgtctttggtaatattcaccaagttgttaaagaagcagaagataaattacatgatatctgacaacaaattcaaacctc |
33807027 |
T |
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| Q |
319 |
tggctacttagaaaccaaaatacaacaagagaagctagcacnnnnnnnnccttgaagaagccctcaacaaagaagaagtatttttgcaagaaaaatctaa |
418 |
Q |
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| T |
33807028 |
tggctacttagaaaccaaaatacaacaagagaagctagcacaaaaaaaaccttgaagaagccctcaacaaagaagaagcattttggcaagaaaaatctaa |
33807127 |
T |
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| Q |
419 |
actgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaattagaaatactacaaaacacattacatcaatcaaagatggt |
518 |
Q |
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| T |
33807128 |
actgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcgccaaaattagaaatactacaaaacacattacatcaatcaaagatgga |
33807227 |
T |
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| Q |
519 |
ggaaacactatcattga |
535 |
Q |
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| T |
33807228 |
ggaaacactatcattga |
33807244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 368 - 487
Target Start/End: Complemental strand, 232680 - 232561
Alignment:
| Q |
368 |
ccttgaagaagccctcaacaaagaagaagtatttttgcaagaaaaatctaaactgaagtggcatttagaaggtggtaggaacacatcatattttcataag |
467 |
Q |
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| T |
232680 |
ccttgaattagcccttaacaaagaagagatcttctggcaggaaaaatccaaagtgaaatggcatttagaaagtgacaggaacactgcatattttcatagg |
232581 |
T |
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| Q |
468 |
gtcaccaaaattagaaatac |
487 |
Q |
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| T |
232580 |
atcaccaaaataaaaaatac |
232561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 421 - 517
Target Start/End: Original strand, 43233139 - 43233235
Alignment:
| Q |
421 |
tgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaattagaaatactacaaaacacattacatcaatcaaagatgg |
517 |
Q |
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| T |
43233139 |
tgaagtggcatttagaaggtgatagaaacactgcctatttccgtagggttacaaaaattagacatactaccaatctcatcacttcaatcaaagatgg |
43233235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 487
Target Start/End: Complemental strand, 42535 - 42426
Alignment:
| Q |
378 |
gccctcaacaaagaagaagtatttttgcaagaaaaatctaaactgaagtggcatttagaaggtggtaggaacacatcatattttcataaggtcaccaaaa |
477 |
Q |
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| T |
42535 |
gccctgaacaaagaggaaattttctggcaagaaaaatccaaagtgaaatggcatttaaaaggtgatagaaacgctgcatatttccacagagtcaccaaaa |
42436 |
T |
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| Q |
478 |
ttagaaatac |
487 |
Q |
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| T |
42435 |
ttaaaaatac |
42426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 463
Target Start/End: Complemental strand, 11179455 - 11179415
Alignment:
| Q |
423 |
aagtggcatttagaaggtggtaggaacacatcatattttca |
463 |
Q |
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| T |
11179455 |
aagtggcatgtggaaggtgataggaacacatcatattttca |
11179415 |
T |
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