View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_low_4 (Length: 529)

Name: NF14934_low_4
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_low_4
NF14934_low_4
[»] chr5 (22 HSPs)
chr5 (1-523)||(33816862-33817387)
chr5 (482-524)||(33818664-33818706)
chr5 (482-524)||(618288-618330)
chr5 (482-524)||(16121942-16121984)
chr5 (482-523)||(12328330-12328371)
chr5 (483-524)||(13620230-13620271)
chr5 (482-523)||(17986723-17986764)
chr5 (483-524)||(23423859-23423900)
chr5 (483-527)||(20959503-20959547)
chr5 (488-527)||(7003828-7003867)
chr5 (482-524)||(2472817-2472859)
chr5 (482-524)||(3080799-3080841)
chr5 (482-516)||(12045721-12045755)
chr5 (482-524)||(13974181-13974223)
chr5 (482-524)||(25673331-25673373)
chr5 (482-524)||(35620446-35620488)
chr5 (482-523)||(8108964-8109005)
chr5 (482-515)||(8886963-8886996)
chr5 (483-524)||(23975630-23975671)
chr5 (482-515)||(36832002-36832035)
chr5 (488-524)||(17039734-17039770)
chr5 (488-516)||(23408980-23409008)
[»] scaffold0039 (1 HSPs)
scaffold0039 (208-458)||(41761-42011)
[»] chr4 (23 HSPs)
chr4 (226-431)||(43233643-43233848)
chr4 (482-524)||(5399601-5399643)
chr4 (482-524)||(25147713-25147755)
chr4 (482-524)||(2275781-2275823)
chr4 (482-524)||(8878875-8878917)
chr4 (482-524)||(22128415-22128457)
chr4 (482-524)||(22156704-22156746)
chr4 (482-524)||(33914051-33914093)
chr4 (482-524)||(37378726-37378768)
chr4 (482-523)||(1638439-1638480)
chr4 (482-527)||(16915361-16915406)
chr4 (482-523)||(22168260-22168301)
chr4 (482-524)||(18051831-18051873)
chr4 (482-524)||(18744173-18744215)
chr4 (482-524)||(46286332-46286374)
chr4 (482-516)||(55309324-55309358)
chr4 (397-446)||(12302631-12302680)
chr4 (482-527)||(39234934-39234979)
chr4 (223-279)||(12302798-12302854)
chr4 (488-516)||(13565026-13565054)
chr4 (488-524)||(27040128-27040164)
chr4 (488-516)||(32175848-32175876)
chr4 (488-516)||(45532690-45532718)
[»] chr1 (33 HSPs)
chr1 (482-527)||(17734054-17734099)
chr1 (482-529)||(13102310-13102357)
chr1 (482-524)||(14760861-14760903)
chr1 (483-524)||(7830026-7830067)
chr1 (482-524)||(6412156-6412198)
chr1 (482-524)||(6459211-6459253)
chr1 (482-524)||(9110078-9110120)
chr1 (482-524)||(15243079-15243121)
chr1 (482-524)||(18895003-18895045)
chr1 (482-524)||(41752427-41752469)
chr1 (482-524)||(45839286-45839328)
chr1 (483-524)||(12720804-12720845)
chr1 (482-527)||(22789691-22789736)
chr1 (488-524)||(16913680-16913716)
chr1 (483-527)||(38531270-38531314)
chr1 (488-527)||(9259283-9259322)
chr1 (482-524)||(9464097-9464139)
chr1 (482-524)||(12161808-12161850)
chr1 (490-524)||(12174869-12174903)
chr1 (482-524)||(12370044-12370086)
chr1 (482-524)||(20408263-20408305)
chr1 (482-524)||(22158796-22158838)
chr1 (482-516)||(22603542-22603576)
chr1 (482-524)||(23457891-23457933)
chr1 (482-516)||(41071946-41071980)
chr1 (482-524)||(50845433-50845475)
chr1 (482-524)||(52183672-52183714)
chr1 (482-527)||(12989846-12989891)
chr1 (482-523)||(17661044-17661085)
chr1 (482-527)||(41063191-41063236)
chr1 (482-523)||(52621148-52621189)
chr1 (488-516)||(29549418-29549446)
chr1 (483-523)||(48522513-48522553)
[»] scaffold0006 (1 HSPs)
scaffold0006 (208-452)||(231894-232138)
[»] scaffold0058 (1 HSPs)
scaffold0058 (482-524)||(74644-74686)
[»] chr8 (24 HSPs)
chr8 (482-524)||(17103968-17104010)
chr8 (483-524)||(17824719-17824760)
chr8 (482-527)||(37992091-37992136)
chr8 (488-527)||(8555404-8555443)
chr8 (482-524)||(6816486-6816528)
chr8 (482-524)||(17810290-17810332)
chr8 (482-524)||(29350915-29350957)
chr8 (482-524)||(33652559-33652601)
chr8 (483-524)||(18844647-18844688)
chr8 (482-527)||(22939305-22939350)
chr8 (482-527)||(24193296-24193341)
chr8 (482-527)||(24576124-24576169)
chr8 (482-527)||(27869230-27869275)
chr8 (482-516)||(3823125-3823159)
chr8 (482-524)||(9915143-9915185)
chr8 (482-524)||(18010163-18010205)
chr8 (482-524)||(27910867-27910909)
chr8 (482-524)||(27957286-27957328)
chr8 (482-516)||(40289531-40289565)
chr8 (482-523)||(4330970-4331011)
chr8 (482-515)||(6817046-6817079)
chr8 (482-515)||(32961651-32961684)
chr8 (315-360)||(44129566-44129611)
chr8 (488-516)||(43431670-43431698)
[»] chr7 (27 HSPs)
chr7 (482-524)||(40847538-40847580)
chr7 (483-524)||(39979727-39979768)
chr7 (482-529)||(23232033-23232080)
chr7 (482-529)||(36993814-36993861)
chr7 (482-524)||(15014508-15014550)
chr7 (482-524)||(20924061-20924103)
chr7 (482-524)||(24140444-24140486)
chr7 (482-524)||(27806012-27806054)
chr7 (482-524)||(28800872-28800914)
chr7 (482-524)||(36636500-36636542)
chr7 (482-524)||(47523753-47523795)
chr7 (483-524)||(23577292-23577333)
chr7 (482-527)||(24605832-24605877)
chr7 (482-524)||(1907349-1907391)
chr7 (482-524)||(2457664-2457706)
chr7 (482-524)||(7733415-7733457)
chr7 (482-516)||(10050947-10050981)
chr7 (482-520)||(11890254-11890292)
chr7 (482-524)||(20174014-20174056)
chr7 (482-524)||(20429459-20429501)
chr7 (482-524)||(22486388-22486430)
chr7 (482-524)||(22501588-22501630)
chr7 (482-516)||(31425622-31425656)
chr7 (482-524)||(37135388-37135430)
chr7 (482-524)||(42926523-42926565)
chr7 (488-516)||(9698649-9698677)
chr7 (488-524)||(11036507-11036543)
[»] chr6 (28 HSPs)
chr6 (482-524)||(12951702-12951744)
chr6 (482-524)||(22083832-22083874)
chr6 (482-527)||(24661109-24661154)
chr6 (482-524)||(2992609-2992651)
chr6 (482-524)||(9892957-9892999)
chr6 (482-524)||(18033628-18033670)
chr6 (482-524)||(27796937-27796979)
chr6 (482-527)||(11049851-11049896)
chr6 (483-524)||(11530220-11530261)
chr6 (483-524)||(18048783-18048824)
chr6 (482-524)||(6598458-6598500)
chr6 (482-524)||(9885237-9885279)
chr6 (482-524)||(12200688-12200730)
chr6 (482-524)||(14036614-14036656)
chr6 (482-524)||(14886555-14886597)
chr6 (482-516)||(15364569-15364603)
chr6 (482-524)||(21140933-21140975)
chr6 (482-524)||(22055715-22055757)
chr6 (482-524)||(22579452-22579494)
chr6 (482-524)||(26224422-26224464)
chr6 (482-524)||(26939581-26939623)
chr6 (482-524)||(27705416-27705458)
chr6 (482-516)||(28364905-28364939)
chr6 (483-516)||(25397997-25398030)
chr6 (482-523)||(33250812-33250853)
chr6 (488-516)||(495738-495766)
chr6 (483-523)||(12351690-12351730)
chr6 (483-527)||(16250902-16250946)
[»] chr3 (30 HSPs)
chr3 (482-524)||(29215982-29216024)
chr3 (482-524)||(49915441-49915483)
chr3 (482-527)||(8428161-8428206)
chr3 (489-524)||(19610335-19610370)
chr3 (482-524)||(16299851-16299893)
chr3 (482-524)||(17762632-17762674)
chr3 (482-524)||(18104633-18104675)
chr3 (482-524)||(19063952-19063994)
chr3 (482-524)||(27968905-27968947)
chr3 (482-524)||(30219328-30219370)
chr3 (482-524)||(36543739-36543781)
chr3 (483-524)||(28389964-28390005)
chr3 (488-524)||(25882566-25882602)
chr3 (388-455)||(3564856-3564923)
chr3 (482-524)||(4393453-4393495)
chr3 (482-516)||(8110329-8110363)
chr3 (482-524)||(9652568-9652610)
chr3 (482-516)||(11915748-11915782)
chr3 (482-524)||(17582404-17582446)
chr3 (482-524)||(18091650-18091692)
chr3 (482-524)||(18539794-18539836)
chr3 (482-516)||(19269975-19270009)
chr3 (482-524)||(26830545-26830587)
chr3 (482-516)||(27449078-27449112)
chr3 (482-524)||(36564542-36564584)
chr3 (483-524)||(1628206-1628247)
chr3 (483-524)||(8543460-8543501)
chr3 (483-516)||(11007794-11007827)
chr3 (483-524)||(15490026-15490067)
chr3 (490-527)||(27182756-27182793)
[»] chr2 (26 HSPs)
chr2 (482-524)||(30783328-30783370)
chr2 (482-524)||(22192182-22192224)
chr2 (482-524)||(27327606-27327648)
chr2 (482-524)||(27523001-27523043)
chr2 (482-524)||(29749506-29749548)
chr2 (482-524)||(31266344-31266386)
chr2 (482-524)||(41637608-41637650)
chr2 (482-527)||(14757221-14757266)
chr2 (482-527)||(21293811-21293856)
chr2 (482-527)||(40018792-40018837)
chr2 (488-523)||(18609510-18609545)
chr2 (482-524)||(1141526-1141568)
chr2 (482-524)||(8430286-8430328)
chr2 (482-524)||(15636838-15636880)
chr2 (482-524)||(18551356-18551398)
chr2 (482-524)||(18916503-18916545)
chr2 (482-524)||(26687794-26687836)
chr2 (482-516)||(27058427-27058461)
chr2 (482-524)||(28841445-28841487)
chr2 (482-524)||(32185822-32185864)
chr2 (482-524)||(32300441-32300483)
chr2 (482-524)||(44366100-44366142)
chr2 (482-515)||(9004420-9004453)
chr2 (483-524)||(23388481-23388522)
chr2 (483-524)||(28262355-28262396)
chr2 (483-524)||(37724095-37724136)
[»] scaffold0047 (1 HSPs)
scaffold0047 (483-524)||(58577-58618)
[»] scaffold0717 (1 HSPs)
scaffold0717 (482-524)||(1022-1064)
[»] scaffold0219 (1 HSPs)
scaffold0219 (482-524)||(19597-19639)
[»] scaffold0087 (1 HSPs)
scaffold0087 (482-524)||(37890-37932)
[»] scaffold0001 (2 HSPs)
scaffold0001 (482-524)||(8213-8255)
scaffold0001 (482-524)||(21945-21987)
[»] scaffold0161 (1 HSPs)
scaffold0161 (482-523)||(6789-6830)
[»] scaffold0069 (1 HSPs)
scaffold0069 (483-524)||(10153-10194)
[»] scaffold0019 (1 HSPs)
scaffold0019 (388-455)||(138939-139006)
[»] scaffold0603 (1 HSPs)
scaffold0603 (482-516)||(6090-6124)
[»] scaffold0599 (1 HSPs)
scaffold0599 (482-516)||(7499-7533)
[»] scaffold0576 (1 HSPs)
scaffold0576 (482-516)||(9340-9374)
[»] scaffold0009 (1 HSPs)
scaffold0009 (482-524)||(219630-219672)
[»] scaffold0502 (1 HSPs)
scaffold0502 (482-523)||(10886-10927)
[»] scaffold0184 (1 HSPs)
scaffold0184 (483-524)||(7451-7492)
[»] scaffold0023 (1 HSPs)
scaffold0023 (482-527)||(39803-39848)


Alignment Details
Target: chr5 (Bit Score: 439; Significance: 0; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Complemental strand, 33817387 - 33816862
Alignment:
Q  1 taaatcaccattatccaccggtttagaaatgcccctgctcaacacttcttctgcaagatagaaaagcgagtacacttaaagtacacttaaaagtaaccat 100  Q
    ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817387 taaatcaccattatccaccagtttagaaatgcccgtgctcaacacttcttctgcaagatagaaaagcgagtacacttaaagtacacttaaaagtaaccat 33817288  T
Q  101 gttgggtaccattgatagagatagataagtgagctgaatccagtatggcctttatccaattacgggaagttgcattaaaaccaaactttgttaaaacttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| | |||||||||||||||||||||||||    
T  33817287 gttgggtaccattgatagagatagataagtgagctgaatccagtgtggccattatccaattacgggaagttgtactaaaaccaaactttgttaaaacttc 33817188  T
Q  201 aatcaacaaactccattctaatgtatcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgactttgcatcaagcaaattaatagct 300  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33817187 aatcaaaaaactccattctaatgtatcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgactttgcatcaagcaaattaatagct 33817088  T
Q  301 tctgaagctataagaatgcaatcctttatattcctaccatgaatgaaacctctttgctctctagaaattaaagtaggcattaatagagctaac---atgt 397  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    |||    
T  33817087 tctgaagctataagaatgcaatcctttatattcctaccatgaatgaaacctctttgctctttagaaattaaagtaggcattaattgagctaacctgttgt 33816988  T
Q  398 ctgctatgatcttggagatggttttgaatttaaaattggccattgcaattggtctaaactgactcattatcactactnnnnnnncaaaagttagtgaggg 497  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||       ||||||||||||||||    
T  33816987 ctgctatgatcttggagatgattttgaatttaatattggccattgcaattggtctaaactgactcattgtcactactaaaaaaacaaaagttagtgaggg 33816888  T
Q  498 aaatttagtgagggaaaacatgaaat 523  Q
    ||||||||||||||||||||||||||    
T  33816887 aaatttagtgagggaaaacatgaaat 33816862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 33818706 - 33818664
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  33818706 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 33818664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 618288 - 618330
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  618288 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 618330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 16121984 - 16121942
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  16121984 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 16121942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 12328371 - 12328330
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  12328371 caaaaattagtgagggatatttagtgagggaaaacatgaaat 12328330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 13620271 - 13620230
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  13620271 aaaaattagtgacggaaatttagtgagggaaaacatgaaatc 13620230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 17986723 - 17986764
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  17986723 caaaaattagtgagggatatttagtgagggaaaacatgaaat 17986764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 23423900 - 23423859
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||| ||||||||||||||||||||||||||||    
T  23423900 aaaaattagtgagtgaaatttagtgagggaaaacatgaaatc 23423859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 527
Target Start/End: Original strand, 20959503 - 20959547
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||    
T  20959503 aaaaattagtgagggaaatttagagagggaaaacgtgaaatctct 20959547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 527
Target Start/End: Complemental strand, 7003867 - 7003828
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  7003867 ttagtgagggaaattttgtgagggaaaacgtgaaatctct 7003828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 2472859 - 2472817
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||    
T  2472859 caaaaattaatgagggatatttagtgagggaaaacatgaaatc 2472817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 3080841 - 3080799
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| | |||||||||||||||||||||||||||    
T  3080841 caaaaattagtgaagaaaatttagtgagggaaaacatgaaatc 3080799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 12045721 - 12045755
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  12045721 caaaaattagtgagggaaatttagtgagggaaaac 12045755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 13974223 - 13974181
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  13974223 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 13974181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 25673373 - 25673331
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||  ||||||||||||||    
T  25673373 caaaatttagtgagggaaatttagtgacagaaaacatgaaatc 25673331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 35620488 - 35620446
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||    
T  35620488 caaaaattaatgagggatatttagtgagggaaaacatgaaatc 35620446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 8109005 - 8108964
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| |||||||| ||||||| |||||||||||||||||||    
T  8109005 caaaaattagtgagagaaattttgtgagggaaaacatgaaat 8108964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 8886996 - 8886963
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaa 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  8886996 caaaaattagtgagggaaatttagtgagggaaaa 8886963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 23975630 - 23975671
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  23975630 aaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 23975671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 36832035 - 36832002
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaa 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  36832035 caaaaattagtgagggaaatttagtgagggaaaa 36832002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 524
Target Start/End: Complemental strand, 17039770 - 17039734
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||||||||||||| |||||||||||||| |||||||    
T  17039770 ttagtgagggaaatatagtgagggaaaacgtgaaatc 17039734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Original strand, 23408980 - 23409008
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  23408980 ttagtgagggaaatttagtgagggaaaac 23409008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 208 - 458
Target Start/End: Original strand, 41761 - 42011
Alignment:
Q  208 aaactccattctaatgtatcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgactttgcatcaagcaaattaatagcttctgaag 307  Q
    |||||||| || || |||||||||||||||||||| ||||||| || ||| |  || || ||||| ||||||| ||| || || ||||| ||||| ||||    
T  41761 aaactccactccaaagtatcaaaggctttggctatgtccactttcagagcaacattccccccaaaggactttgtatccagtaagttaatggcttcagaag 41860  T
Q  308 ctataagaatgcaatcctttatattcctaccatgaatgaaacctctttgctctctagaaattaaagtaggcattaatagagctaacatgtctgctatgat 407  Q
    |||||||||| ||||| || || || || || ||||| || |||||||| | | |||| |||||   |||||| | | |||||||  | |||||||  ||    
T  41861 ctataagaatacaatcattgatgtttctgccctgaataaatcctctttgttgtttagagattaactcaggcatgatttgagctaatctatctgctaaaat 41960  T
Q  408 cttggagatggttttgaatttaaaattggccattgcaattggtctaaactg 458  Q
    |||||||||  |||| ||||||||||||||||| | |||||| || |||||    
T  41961 cttggagataattttaaatttaaaattggccatagaaattggcctgaactg 42011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 226 - 431
Target Start/End: Complemental strand, 43233848 - 43233643
Alignment:
Q  226 tcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgactttgcatcaagcaaattaatagcttctgaagctataagaatgcaatcct 325  Q
    ||||| || ||||||||||| || | || ||| || || || ||||||||||| | |||||| |||||||| | |||||||||||| | ||||||||| |    
T  43233848 tcaaaagccttggctatatcaaccttcagagcaatattacctccaaatgacttagtatcaagtaaattaatggtttctgaagctatgaaaatgcaatctt 43233749  T
Q  326 ttatattcctaccatgaatgaaacctctttgctctctagaaattaaagtaggcattaatagagctaacatgtctgctatgatcttggagatggttttgaa 425  Q
    | || ||||| |||||||| |||||||| || |  |||||||| |||| |||||| |   |||||||||||||| |||  ||||| |||||  | |||||    
T  43233748 tgatgttccttccatgaataaaacctctctgttgcctagaaatcaaagaaggcatgatatgagctaacatgtctactagaatctttgagataatcttgaa 43233649  T
Q  426 tttaaa 431  Q
    ||||||    
T  43233648 tttaaa 43233643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 5399601 - 5399643
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  5399601 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 5399643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 25147713 - 25147755
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  25147713 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 25147755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 2275823 - 2275781
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  2275823 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 2275781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 8878875 - 8878917
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  8878875 caaaaattagtgacggaaatttagtgagggaaaacatgaaatc 8878917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 22128457 - 22128415
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  22128457 caaaaattagtgagggaaatttagtgagggaaaacgtgaaatc 22128415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 22156746 - 22156704
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  22156746 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 22156704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 33914051 - 33914093
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  33914051 caaaaattagtgagggaaatttagtgaggaaaaacatgaaatc 33914093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 37378768 - 37378726
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  37378768 caaaaattagtgagggaaattttgtgagggaaaacatgaaatc 37378726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 1638439 - 1638480
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  1638439 caaaaattagtgaggaaaatttagtgagggaaaacatgaaat 1638480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 16915361 - 16915406
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||| |||||||||||||||||||| |||||||||||    
T  16915361 caaaaattagtgacggaaatttagtgagggaaaatatgaaatctct 16915406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 22168260 - 22168301
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  22168260 caaaaattagtgagggatatttagtgagggaaaacatgaaat 22168301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 18051831 - 18051873
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  18051831 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 18051873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18744215 - 18744173
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  18744215 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 18744173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 46286374 - 46286332
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  46286374 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 46286332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 55309358 - 55309324
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  55309358 caaaaattagtgagggaaatttagtgagggaaaac 55309324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 446
Target Start/End: Complemental strand, 12302680 - 12302631
Alignment:
Q  397 tctgctatgatcttggagatggttttgaatttaaaattggccattgcaat 446  Q
    ||||||| ||||||||||||| |||||||||| |||||||| || |||||    
T  12302680 tctgctaagatcttggagatgattttgaatttgaaattggcaatagcaat 12302631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 39234934 - 39234979
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||||||||||||| || ||||||| ||||||||||    
T  39234934 caaaaattagtgagggaaatttagagaaggaaaacgtgaaatctct 39234979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 12302854 - 12302798
Alignment:
Q  223 gtatcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgacttt 279  Q
    |||||||| ||||||||||| ||||| | |||||||| |||||| ||||| ||||||    
T  12302854 gtatcaaaagctttggctatgtccaccttcaaagctaagttgcctccaaaagacttt 12302798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 13565054 - 13565026
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  13565054 ttagtgagggaaatttagtgagggaaaac 13565026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 524
Target Start/End: Complemental strand, 27040164 - 27040128
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||||||||||||||| |||||||||||| |||||||    
T  27040164 ttagtgagggaaattttgtgagggaaaacgtgaaatc 27040128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 32175876 - 32175848
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  32175876 ttagtgagggaaatttagtgagggaaaac 32175848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 45532718 - 45532690
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  45532718 ttagtgagggaaatttagtgagggaaaac 45532690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 17734099 - 17734054
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  17734099 caaaaattagtgagggaaatttagtgagggaaaacatgaaatctct 17734054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 13102310 - 13102357
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctcttt 529  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13102310 caaaaattagtgagggaaatttagtgagggaaaacataaaatctcttt 13102357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 14760861 - 14760903
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  14760861 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 14760903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 7830026 - 7830067
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  7830026 aaaaattagtgagggaaatttagtgagggaaaacatgaaatc 7830067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 6412198 - 6412156
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6412198 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 6412156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 6459211 - 6459253
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6459211 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 6459253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 9110120 - 9110078
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  9110120 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 9110078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 15243079 - 15243121
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  15243079 caaaaattagtgagggaaatttagtgagggaaaacgtgaaatc 15243121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18895045 - 18895003
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  18895045 caaaaattagtgaggaaaatttagtgagggaaaacatgaaatc 18895003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 41752427 - 41752469
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  41752427 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 41752469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 45839286 - 45839328
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  45839286 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 45839328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 12720804 - 12720845
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  12720804 aaaaattagtgagggatatttagtgagggaaaacatgaaatc 12720845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 22789736 - 22789691
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||||||||||||| |||||||||| ||||||||||    
T  22789736 caaaaattagtgagggaaatttagagagggaaaacgtgaaatctct 22789691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 524
Target Start/End: Complemental strand, 16913716 - 16913680
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||||||||||||||||| ||||||||||||||||||    
T  16913716 ttagtgagggaaatttagagagggaaaacatgaaatc 16913680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 483 - 527
Target Start/End: Complemental strand, 38531314 - 38531270
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||| |||||||||||||||||| |||||||||| ||||||||||    
T  38531314 aaaaattagtgagggaaatttagagagggaaaacgtgaaatctct 38531270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 527
Target Start/End: Complemental strand, 9259322 - 9259283
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||||||||||||||| |||||||||||| ||||||||||    
T  9259322 ttagtgagggaaattttgtgagggaaaacgtgaaatctct 9259283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 9464097 - 9464139
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  9464097 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 9464139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 12161808 - 12161850
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  12161808 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 12161850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 524
Target Start/End: Complemental strand, 12174903 - 12174869
Alignment:
Q  490 agtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||||||| |||||||||||||||||||||||||    
T  12174903 agtgagggatatttagtgagggaaaacatgaaatc 12174869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 12370086 - 12370044
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||    
T  12370086 caaaaattagtgagggaaatttagtaagggaaaacataaaatc 12370044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 20408305 - 20408263
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  20408305 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 20408263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 22158796 - 22158838
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  22158796 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 22158838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 22603542 - 22603576
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  22603542 caaaaattagtgagggaaatttagtgagggaaaac 22603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 23457891 - 23457933
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  23457891 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 23457933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 41071980 - 41071946
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  41071980 caaaaattagtgagggaaatttagtgagggaaaac 41071946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 50845475 - 50845433
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||| || |||||||||||||||||||||||||||    
T  50845475 caaaaattagtgtggaaaatttagtgagggaaaacatgaaatc 50845433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 52183672 - 52183714
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  52183672 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 52183714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 12989846 - 12989891
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||||||||||| | |||||||||| ||||||||||    
T  12989846 caaaaattagtgagggaaattttgagagggaaaacgtgaaatctct 12989891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 17661044 - 17661085
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  17661044 caaaaattagtgagggaaattttgtgagggaaaacgtgaaat 17661085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 41063191 - 41063236
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||| ||||||||||||| ||||||| ||||||||    
T  41063191 caaaaattagtgaggaaaatttagtgaggaaaaacataaaatctct 41063236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 52621148 - 52621189
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||| ||||||||||||| ||||||||||||    
T  52621148 caaaaattagtgaggaaaatttagtgaggaaaaacatgaaat 52621189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Original strand, 29549418 - 29549446
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  29549418 ttagtgagggaaatttagtgagggaaaac 29549446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 523
Target Start/End: Original strand, 48522513 - 48522553
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    |||| ||||||||||| || |||||||||||||||||||||    
T  48522513 aaaaattagtgagggatatgtagtgagggaaaacatgaaat 48522553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 208 - 452
Target Start/End: Original strand, 231894 - 232138
Alignment:
Q  208 aaactccattctaatgtatcaaaggctttggctatatccacttccaaagctatgttgccaccaaatgactttgcatcaagcaaattaatagcttctgaag 307  Q
    ||||||||||| |  |||||||| |  || |||||||||||||  | ||| || ||||| ||||| ||||||| |||||| |||||||| |||||||| |    
T  231894 aaactccattcaagagtatcaaaagtctttgctatatccacttttagagcaatattgcctccaaaagactttgaatcaagtaaattaatggcttctgagg 231993  T
Q  308 ctataagaatgcaatcctttatattcctaccatgaatgaaacctctttgctctctagaaattaaagtaggcattaatagagctaacatgtctgctatgat 407  Q
    |  |||  ||||| || || || || ||||| || |||||||||||||| | | ||||||||||||  ||||| | | ||| |||| | ||||| |  ||    
T  231994 cagtaaagatgcattctttgatgtttctaccttgtatgaaacctctttgttgtttagaaattaaagctggcataatttgagataacctatctgcaagaat 232093  T
Q  408 cttggagatggttttgaatttaaaattggccattgcaattggtct 452  Q
    ||| || |    ||||||||||||||| |||| ||||||||||||    
T  232094 ctttgaaagcactttgaatttaaaattagccaatgcaattggtct 232138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 74686 - 74644
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  74686 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 74644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 17104010 - 17103968
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  17104010 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 17103968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 17824760 - 17824719
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  17824760 aaaaattagtgagggaaatttagtgagggaaaacatgaaatc 17824719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 37992091 - 37992136
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||    
T  37992091 caaaaattagtgaggaaaatttagtgagggaaaacatgaaatctct 37992136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 488 - 527
Target Start/End: Complemental strand, 8555443 - 8555404
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  8555443 ttagtgagggaaatttagtgagggaaaacataaaatctct 8555404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 6816528 - 6816486
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  6816528 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 6816486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 17810290 - 17810332
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  17810290 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 17810332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 29350915 - 29350957
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  29350915 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 29350957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 33652559 - 33652601
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  33652559 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 33652601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 18844688 - 18844647
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  18844688 aaaaattagtgagggaaatttagtgaaggaaaacatgaaatc 18844647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 22939305 - 22939350
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||    
T  22939305 caaaaattagtgagagatatttagtgagggaaaacatgaaatctct 22939350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 24193341 - 24193296
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||| ||||||| |||||||||||||||||||||||    
T  24193341 caaaaattagtgagagaaattttgtgagggaaaacatgaaatctct 24193296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 24576169 - 24576124
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||||    
T  24576169 caaaaattagtgagggatatttagcgagggaaaacatgaaatctct 24576124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 27869230 - 27869275
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||    
T  27869230 caaaaattagtgagagatatttagtgagggaaaacatgaaatctct 27869275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 3823125 - 3823159
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  3823125 caaaaattagtgagggaaatttagtgagggaaaac 3823159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 9915185 - 9915143
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  9915185 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 9915143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18010205 - 18010163
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  18010205 caaaaattagtgagggatatttattgagggaaaacatgaaatc 18010163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 27910909 - 27910867
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  27910909 caaaaattagtgagggatatttactgagggaaaacatgaaatc 27910867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 27957328 - 27957286
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||| |||||||||||||||||||    
T  27957328 caaaaattagtgagggatatttactgagggaaaacatgaaatc 27957286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 40289565 - 40289531
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  40289565 caaaaattagtgagggaaatttagtgagggaaaac 40289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 4330970 - 4331011
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| |||||||||||||||| |||||||||||| ||||||    
T  4330970 caaaaattagtgagggaaattttgtgagggaaaacgtgaaat 4331011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 6817046 - 6817079
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaa 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  6817046 caaaaattagtgagggaaatttagtgagggaaaa 6817079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Original strand, 32961651 - 32961684
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaa 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  32961651 caaaaattagtgagggaaatttagtgagggaaaa 32961684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 360
Target Start/End: Complemental strand, 44129611 - 44129566
Alignment:
Q  315 aatgcaatcctttatattcctaccatgaatgaaacctctttgctct 360  Q
    |||||| || |||||||||||||||||||||||  |||||||||||    
T  44129611 aatgcagtcttttatattcctaccatgaatgaatgctctttgctct 44129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 43431698 - 43431670
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  43431698 ttagtgagggaaatttagtgagggaaaac 43431670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 40847580 - 40847538
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  40847580 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 40847538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 39979768 - 39979727
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  39979768 aaaaattagtgagggaaatttagtgagggaaaacatgaaatc 39979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 23232033 - 23232080
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctcttt 529  Q
    ||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  23232033 caaaaattagtgagggatatttagtgagggaaaacatgaaatcccttt 23232080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 529
Target Start/End: Original strand, 36993814 - 36993861
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctcttt 529  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36993814 caaaaattagtgaaggaaatttagtgaggaaaaacatgaaatctcttt 36993861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 15014550 - 15014508
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  15014550 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 15014508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 20924103 - 20924061
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  20924103 caaaaattagtgatggaaatttagtgagggaaaacatgaaatc 20924061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 24140444 - 24140486
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||||||||||| |||||    
T  24140444 caaaaattagtgagggaaatttagtgagggaaaacataaaatc 24140486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 27806012 - 27806054
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  27806012 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 27806054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 28800872 - 28800914
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  28800872 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 28800914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 36636500 - 36636542
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  36636500 caaaaattagtgaggcaaatttagtgagggaaaacatgaaatc 36636542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 47523795 - 47523753
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  47523795 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 47523753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 23577333 - 23577292
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  23577333 aaaaattagtgagggaaatttagtgagggaaaacgtgaaatc 23577292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 24605832 - 24605877
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||| ||||||||||||||||||| ||||||||||    
T  24605832 caaaaattagtgaggaaaatttagtgagggaaaacgtgaaatctct 24605877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 1907349 - 1907391
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||    
T  1907349 caaaaattagtgaggaaaatctagtgagggaaaacatgaaatc 1907391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 2457664 - 2457706
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||    
T  2457664 caaaaattagtgaggaaaattttgtgagggaaaacatgaaatc 2457706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 7733457 - 7733415
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  7733457 caaaaattagtgagggatatttagtgaggtaaaacatgaaatc 7733415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 10050981 - 10050947
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  10050981 caaaaattagtgagggaaatttagtgagggaaaac 10050947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 520
Target Start/End: Complemental strand, 11890292 - 11890254
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatga 520  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  11890292 caaaagttagtgaggaaaatttagtgagggaaaatatga 11890254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 20174014 - 20174056
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  20174014 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 20174056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 20429459 - 20429501
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  20429459 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 20429501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 22486388 - 22486430
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||| ||||||| |||||||    
T  22486388 caaaaattagtgagggaaatttagtgacggaaaacgtgaaatc 22486430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 22501588 - 22501630
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  22501588 caaaaattagtgagggaaatttagagagggaaaacgtgaaatc 22501630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 31425656 - 31425622
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  31425656 caaaaattagtgagggaaatttagtgagggaaaac 31425622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 37135430 - 37135388
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  37135430 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 37135388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 42926565 - 42926523
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||||||||| |||||||||||||    
T  42926565 caaaaattagtgagggatatttagtgaggaaaaacatgaaatc 42926523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 9698677 - 9698649
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  9698677 ttagtgagggaaatttagtgagggaaaac 9698649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 11036507 - 11036543
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||||||||||||||| |||||||||||| |||||||    
T  11036507 ttagtgagggaaattttgtgagggaaaacgtgaaatc 11036543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 12951702 - 12951744
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  12951702 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 12951744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 22083832 - 22083874
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  22083832 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 22083874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 24661154 - 24661109
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  24661154 caaaaattagtgagggatatttagtgagggaaaacatgaaatctct 24661109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 2992609 - 2992651
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  2992609 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 2992651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 9892957 - 9892999
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||||||||| |||||||    
T  9892957 caaaaattagtgagggaaatttagtgagggaaaacgtgaaatc 9892999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18033670 - 18033628
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||| |||||||||||||||||||    
T  18033670 caaaaattagtgagggaaatttaatgagggaaaacatgaaatc 18033628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 27796979 - 27796937
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  27796979 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 27796937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 11049896 - 11049851
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||    
T  11049896 caaaaattagtgagagatatttagtgagggaaaacatgaaatctct 11049851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 11530220 - 11530261
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||| |||||||||||||||||||||||||||    
T  11530220 aaaaattagtgaggaaaatttagtgagggaaaacatgaaatc 11530261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 18048783 - 18048824
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  18048783 aaaaattagtgagggaaatttagtgaggaaaaacatgaaatc 18048824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 6598458 - 6598500
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||||||||||||||| |||||||    
T  6598458 caaaaattagtgagggatatttagtgagggaaaacttgaaatc 6598500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 9885237 - 9885279
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| | |||||||||||||||||||||||||||    
T  9885237 caaaaattagtgacgaaaatttagtgagggaaaacatgaaatc 9885279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 12200688 - 12200730
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||    
T  12200688 caaaaattagtgagggatatttagtgagggaaaatatgaaatc 12200730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 14036614 - 14036656
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  14036614 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 14036656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 14886555 - 14886597
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| ||||||||||||||||||||| |||||    
T  14886555 caaaaattagtgaggaaaatttagtgagggaaaacatcaaatc 14886597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 15364603 - 15364569
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  15364603 caaaaattagtgagggaaatttagtgagggaaaac 15364569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 21140933 - 21140975
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  21140933 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 21140975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 22055757 - 22055715
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||| |||||||||| |||||||||||||    
T  22055757 caaaaattagtgagggaagtttagtgaggaaaaacatgaaatc 22055715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 22579494 - 22579452
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  22579494 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 22579452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 26224422 - 26224464
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||| |||||| |||||||||||||||||||||||||    
T  26224422 caaaaattagcgagggatatttagtgagggaaaacatgaaatc 26224464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 26939581 - 26939623
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||| || |||||||||||||||||||||||||    
T  26939581 caaaaattagtgagagatatttagtgagggaaaacatgaaatc 26939623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 27705416 - 27705458
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  27705416 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 27705458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 28364905 - 28364939
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  28364905 caaaaattagtgagggaaatttagtgagggaaaac 28364939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 516
Target Start/End: Original strand, 25397997 - 25398030
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaac 516  Q
    |||| |||||||||||||||||||||||||||||    
T  25397997 aaaaattagtgagggaaatttagtgagggaaaac 25398030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Complemental strand, 33250853 - 33250812
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| |||||||| || ||||||||||||||||||||||||    
T  33250853 caaaaattagtgagagatatttagtgagggaaaacatgaaat 33250812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 488 - 516
Target Start/End: Complemental strand, 495766 - 495738
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaac 516  Q
    |||||||||||||||||||||||||||||    
T  495766 ttagtgagggaaatttagtgagggaaaac 495738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 523
Target Start/End: Complemental strand, 12351730 - 12351690
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    |||| |||||||||||||||||| |||||||||| ||||||    
T  12351730 aaaaattagtgagggaaatttagagagggaaaacgtgaaat 12351690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 483 - 527
Target Start/End: Complemental strand, 16250946 - 16250902
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||| |||||||| ||||||| |||||||||||| ||||||||||    
T  16250946 aaaaattagtgagagaaattttgtgagggaaaacgtgaaatctct 16250902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 29215982 - 29216024
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  29215982 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 29216024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 49915441 - 49915483
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  49915441 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 49915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 8428161 - 8428206
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  8428161 caaaaattagtgagggatatttagtgagggaaaacatgaaatctct 8428206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 489 - 524
Target Start/End: Original strand, 19610335 - 19610370
Alignment:
Q  489 tagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||||||||||||||||||||||||||||||||||    
T  19610335 tagtgagggaaatttagtgagggaaaacatgaaatc 19610370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 16299851 - 16299893
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  16299851 caaaaattagtgagggaaatttggtgagggaaaacatgaaatc 16299893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 17762632 - 17762674
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  17762632 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 17762674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18104675 - 18104633
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  18104675 caaaaattagtgagggaaattttgtgagggaaaacatgaaatc 18104633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 19063952 - 19063994
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  19063952 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 19063994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 27968905 - 27968947
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  27968905 caaaaattagtgacggaaatttagtgagggaaaacatgaaatc 27968947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 30219328 - 30219370
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||||||||||||||| |||||||||||||    
T  30219328 caaaaattagtgagggaaatttagtgaggaaaaacatgaaatc 30219370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 36543739 - 36543781
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  36543739 caaaaattagtgagggaaattttgtgagggaaaacatgaaatc 36543781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 28389964 - 28390005
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||||||||||||||||||||| |||||||    
T  28389964 aaaaattagtgagggaaatttagtgagggaaaacgtgaaatc 28390005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 524
Target Start/End: Original strand, 25882566 - 25882602
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25882566 ttagtgagggatatttagtgagggaaaacatgaaatc 25882602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 3564856 - 3564923
Alignment:
Q  388 gctaacatgtctgctatgatcttggagatggttttgaatttaaaattggccattgcaattggtctaaa 455  Q
    |||||| |||| || |||||||| || |||  ||||||||| || |||||||||||||||||||||||    
T  3564856 gctaacctgtcagcaatgatctttgaaatgactttgaatttgaagttggccattgcaattggtctaaa 3564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 4393495 - 4393453
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  4393495 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 4393453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 8110329 - 8110363
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  8110329 caaaaattagtgagggaaatttagtgagggaaaac 8110363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 9652568 - 9652610
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  9652568 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 9652610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 11915748 - 11915782
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  11915748 caaaatttagtgagggaaatttagtgagggaaaac 11915782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 17582446 - 17582404
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  17582446 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 17582404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18091692 - 18091650
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||    
T  18091692 caaaaattagtgagggatatttagtgagggaaaacataaaatc 18091650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 18539794 - 18539836
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  18539794 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 18539836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 19270009 - 19269975
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  19270009 caaaaattagtgagggaaatttagtgagggaaaac 19269975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 26830587 - 26830545
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||| |||||||||| |||||||    
T  26830587 caaaaattagtgagggaaatttagagagggaaaacgtgaaatc 26830545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 27449078 - 27449112
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  27449078 caaaaattagtgagggaaatttagtgagggaaaac 27449112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 36564584 - 36564542
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||| |||||||||    
T  36564584 caaaaattagtgagggaaattttgtgagggaaagcatgaaatc 36564542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 1628206 - 1628247
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||| |||||||||| |||||||    
T  1628206 aaaaattagtgagggaaatttagagagggaaaacgtgaaatc 1628247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 8543460 - 8543501
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  8543460 aaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 8543501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 516
Target Start/End: Complemental strand, 11007827 - 11007794
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaac 516  Q
    |||| |||||||||||||||||||||||||||||    
T  11007827 aaaaattagtgagggaaatttagtgagggaaaac 11007794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 15490026 - 15490067
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||||||| |||||| |||||||    
T  15490026 aaaaattagtgagggaaatttagtgagagaaaacgtgaaatc 15490067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 490 - 527
Target Start/End: Complemental strand, 27182793 - 27182756
Alignment:
Q  490 agtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  27182793 agtgagagaaatttagtgagggaaaacaagaaatctct 27182756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 30783328 - 30783370
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  30783328 caaaaattagtgagggaaatttagtgagggaaaacatgaaatc 30783370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 22192182 - 22192224
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||| |||||||||||||||||||||||||||||    
T  22192182 caaaaattagtgacggaaatttagtgagggaaaacatgaaatc 22192224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 27327606 - 27327648
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||| |||||||||||||||||||||||||||||||||    
T  27327606 caaaaattaatgagggaaatttagtgagggaaaacatgaaatc 27327648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 27523001 - 27523043
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  27523001 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 27523043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 29749548 - 29749506
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  29749548 caaaaattagtgaggaaaatttagtgagggaaaacatgaaatc 29749506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 31266344 - 31266386
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  31266344 caaaaattagtgagggaaatttagcgagggaaaacatgaaatc 31266386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 41637608 - 41637650
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||| |||||||||||||||||||||||||||    
T  41637608 caaaaattagtgaggaaaatttagtgagggaaaacatgaaatc 41637650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 14757266 - 14757221
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||| || ||||||||||||||||||||||||||||    
T  14757266 caaaaattagtgagtgatatttagtgagggaaaacatgaaatctct 14757221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 21293856 - 21293811
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| |||||||||||||||| |||||||||||| ||||||||||    
T  21293856 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatctct 21293811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 40018792 - 40018837
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||| | ||||||||||||||||||||||||||||||    
T  40018792 caaaaattagtgacgaaaatttagtgagggaaaacatgaaatctct 40018837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 488 - 523
Target Start/End: Original strand, 18609510 - 18609545
Alignment:
Q  488 ttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    |||||| |||||||||||||||||||||||||||||    
T  18609510 ttagtgggggaaatttagtgagggaaaacatgaaat 18609545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 1141526 - 1141568
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  1141526 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 1141568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 8430286 - 8430328
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  8430286 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 8430328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 15636880 - 15636838
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  15636880 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 15636838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18551398 - 18551356
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| ||||||||||||||||||| |||||    
T  18551398 caaaaattagtgagggatatttagtgagggaaaacataaaatc 18551356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 18916545 - 18916503
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||| ||||||||| ||||||||||||||||||    
T  18916545 caaaaattagtgagagaaatttagggagggaaaacatgaaatc 18916503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 26687836 - 26687794
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||| |||||||||||| |||||||||||||||    
T  26687836 caaaaattagtgagcgaaatttagtgacggaaaacatgaaatc 26687794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 27058461 - 27058427
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  27058461 caaaaattagtgagggaaatttagtgagggaaaac 27058427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 28841487 - 28841445
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||| ||||||||||||||||    
T  28841487 caaaaattagtgagggatatttagtgtgggaaaacatgaaatc 28841445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 32185822 - 32185864
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  32185822 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 32185864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 32300441 - 32300483
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| |||||||||||| |||||||    
T  32300441 caaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 32300483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 44366142 - 44366100
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||| |||||||||| |||||||||||||    
T  44366142 caaaaattagtgagggaagtttagtgaggaaaaacatgaaatc 44366100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 515
Target Start/End: Complemental strand, 9004453 - 9004420
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaa 515  Q
    ||||| ||||||||||||||||||||||||||||    
T  9004453 caaaaattagtgagggaaatttagtgagggaaaa 9004420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 23388522 - 23388481
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  23388522 aaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 23388481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 28262355 - 28262396
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||| |||||||||||| |||||||    
T  28262355 aaaaattagtgagggaaattttgtgagggaaaacgtgaaatc 28262396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 37724136 - 37724095
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||| |||||||||||||||||||| |||||||    
T  37724136 aaaaattagtgagagaaatttagtgagggaaaacgtgaaatc 37724095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 58577 - 58618
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  58577 aaaaattagtgagggaaatttagtgagggaaaacatgaaatc 58618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0717 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 1064 - 1022
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  1064 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 1022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 19597 - 19639
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  19597 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 19639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 37932 - 37890
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||||||||||| ||||||||||||||||||||    
T  37932 caaaaattagtgagggaaattttgtgagggaaaacatgaaatc 37890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 8255 - 8213
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  8255 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 8213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 524
Target Start/End: Complemental strand, 21987 - 21945
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| ||||||||||| |||||||||||||||||||||||||    
T  21987 caaaaattagtgagggatatttagtgagggaaaacatgaaatc 21945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 6789 - 6830
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||| ||||||||||||||||||||||||||||||    
T  6789 caaaaattagtaagggaaatttagtgagggaaaacatgaaat 6830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 10153 - 10194
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||||||||||||||||| |||||||||||||||||||    
T  10153 aaaaattagtgagggaaatttactgagggaaaacatgaaatc 10194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 455
Target Start/End: Original strand, 138939 - 139006
Alignment:
Q  388 gctaacatgtctgctatgatcttggagatggttttgaatttaaaattggccattgcaattggtctaaa 455  Q
    |||||| |||| || |||||||| || |||  ||||||||| || |||||||||||||||||||||||    
T  138939 gctaacctgtcagcaatgatctttgaaatgactttgaatttgaatttggccattgcaattggtctaaa 139006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 6124 - 6090
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  6124 caaaaattagtgagggaaatttagtgagggaaaac 6090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Original strand, 7499 - 7533
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  7499 caaaatttagtgagggaaatttagtgagggaaaac 7533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 516
Target Start/End: Complemental strand, 9374 - 9340
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaac 516  Q
    ||||| |||||||||||||||||||||||||||||    
T  9374 caaaaattagtgagggaaatttagtgagggaaaac 9340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 219630 - 219672
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    ||||| |||||||| || |||||||||||||||||||||||||    
T  219630 caaaaattagtgagagatatttagtgagggaaaacatgaaatc 219672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 523
Target Start/End: Original strand, 10886 - 10927
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaat 523  Q
    ||||| ||||||||||||||||| ||||| ||||||||||||    
T  10886 caaaaattagtgagggaaatttactgaggaaaaacatgaaat 10927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Original strand, 7451 - 7492
Alignment:
Q  483 aaaagttagtgagggaaatttagtgagggaaaacatgaaatc 524  Q
    |||| ||| ||||||||||||||||||||||||| |||||||    
T  7451 aaaaattaatgagggaaatttagtgagggaaaacgtgaaatc 7492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 527
Target Start/End: Complemental strand, 39848 - 39803
Alignment:
Q  482 caaaagttagtgagggaaatttagtgagggaaaacatgaaatctct 527  Q
    ||||| ||||||||||||||||  ||||||||||| ||||||||||    
T  39848 caaaaattagtgagggaaattttatgagggaaaacgtgaaatctct 39803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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