View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14934_low_7 (Length: 519)

Name: NF14934_low_7
Description: NF14934
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14934_low_7
NF14934_low_7
[»] chr1 (2 HSPs)
chr1 (65-519)||(31573585-31574037)
chr1 (9-39)||(31574058-31574088)


Alignment Details
Target: chr1 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 65 - 519
Target Start/End: Complemental strand, 31574037 - 31573585
Alignment:
Q  65 tgataaataatgtatgcatgcaatgaaaaggctgagagagtcaggcatgattcttctactgctatgccgccctatctatctctctagctatgactctatc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31574037 tgataaataatgtatgcatgcaatgaaaaggctgagagagtcaggcatgattcttctactgctatgccgccctatctatctctctagctatgactctatc 31573938  T
Q  165 tatcatttctgacccccagtaataggaaatagctacctagctagctacccaaccaaccaagacaactcatcaacattgtttgttcctttcaatgctttct 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31573937 tatcatttctgacccccagtaataggaaatagctacctagctagctacccaaccaaccaagacaactcatcaacattgtttgttcctttcaatgctttct 31573838  T
Q  265 tagctgtgcctgtgagctgtatcctttaaattttcccttcttcattgcactgtgtaatgtgtatgtatgtatgatgctttaaatcactgttgactgtaat 364  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  31573837 tagctgtgcctgtgagctgtgtcctttaaattttcccttcttcattgtactgtgtaatgtgtatgta--tatgatgctttaaatcactgttgactgtaat 31573740  T
Q  365 tagtgattagttatgttgctacgttcacctccacctttaatcccaccaacccctttttcacattctgccaatccttcttctatttatacactactaaacc 464  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31573739 tagtgattagttatgttgctacgttcacctccacctttaatcccaccaacccctttttcacattctgccaatccttcttctatttatacactactaaacc 31573640  T
Q  465 aacttgttttattgtagcactttctggccttaattattctcagtttcccattctc 519  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||    
T  31573639 aacttgttttattgtagcactttctggccttaactactctcagtttcccattctc 31573585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 9 - 39
Target Start/End: Complemental strand, 31574088 - 31574058
Alignment:
Q  9 acatcatcatattatatttttatagttgaat 39  Q
    |||||||||||||||||||||||||||||||    
T  31574088 acatcatcatattatatttttatagttgaat 31574058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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