View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_high_1 (Length: 654)
Name: NF14935_high_1
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 1 - 651
Target Start/End: Original strand, 11378992 - 11379651
Alignment:
| Q |
1 |
tgatacatgttatttaaaatgataatggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaagtaatggcttagagatctatgtaa |
100 |
Q |
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| T |
11378992 |
tgatacatgttatttaaaatgataatggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaagtaatggcttagagatctatgtaa |
11379091 |
T |
|
| Q |
101 |
taaacataactaaaccattaaacattaatggctaagtcctaaaagtaaataaaca----------attattaaaaatgaagggt-aagtcccaatcttag |
189 |
Q |
| |
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| T |
11379092 |
taaacataactaaaccattaaacattaatggctaagtcctaaaagtaaataaacataaataaacaattattaaaaatgaagggttaagtcccaatcttag |
11379191 |
T |
|
| Q |
190 |
ctggttggttaggaaatacctaacaggggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtgtatatgacaggtactgggataaa |
289 |
Q |
| |
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| T |
11379192 |
ctggttggttaggaaatacctaacaggggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtgtatatgacaggtattgggataaa |
11379291 |
T |
|
| Q |
290 |
ctgagaaaaatgtctacttgaatgccaactcgagtctcgaattaccgaagatagcttagggttggtgaggggcttttggagcaatacgagaggcgcactt |
389 |
Q |
| |
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| T |
11379292 |
ctgagaaaaatgtctacttgaatgccaactcgagtctcgaattaccgaagatagcttagggttggtgaggggcttttggagcaatacgag--gcgcactt |
11379389 |
T |
|
| Q |
390 |
agcctcactgttttcaaaaccatgaattcacattgtccacggttcacttatttaagtggtatgatcacaactcagttgtagttttagcgctgtgtataaa |
489 |
Q |
| |
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| T |
11379390 |
agcctcactgttttcgaaaccatgaattcacattgtccacggttcacttatttaagtggtatgatcacaactcagttgtagttttagcgttgtgtataaa |
11379489 |
T |
|
| Q |
490 |
tgttggtgagcatcaggggcagacctcaacagggcagggtgtggcaatagccacaaatatttttgttttctcagcactcactcaacaacagaacacacac |
589 |
Q |
| |
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| T |
11379490 |
tgttggtgagcatcaggggcagacctgagcagggcagggtatggcaatagccacaaatatttttgttttctcagcactcactcaacaacagaacacacac |
11379589 |
T |
|
| Q |
590 |
attttccttttcccttttctttcccaaattgactgttgcacgcaacacacacgaacccaccg |
651 |
Q |
| |
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| T |
11379590 |
attttccttttcccttttctttcccaaatcaactgctgcacgcaacacacacgaacccaccg |
11379651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 26 - 502
Target Start/End: Complemental strand, 2580244 - 2579764
Alignment:
| Q |
26 |
tggattaatggtgatacagatgttgggatacattgatttcaagaaatcaaagtaatggcttagagatctatgtaataaacataactaaaccattaaacat |
125 |
Q |
| |
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| T |
2580244 |
tggattaatggtgatacagatcttgggatacattgatttcaagaaatgaaagtaatggcttagagatctaagtaataa-------taaaccattaaacat |
2580152 |
T |
|
| Q |
126 |
taatggctaagtcctaaaagtaa---------ataaacaattattaaaaatgaagggt-aagtcccaatcttagctggttggttaggaaatacctaacag |
215 |
Q |
| |
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| T |
2580151 |
caatggctaagtcctaaaagtaataaacataaataaacaattattaaaaatgaagggttaagtcctaaacttag----ttggttaggaaatatctaacag |
2580056 |
T |
|
| Q |
216 |
gggcggtagggcttactttcaacttgaatgaaatttggatttgaggaagtgtatatgacaggtactgggataaactgagaaaaatgtctacttgaatgcc |
315 |
Q |
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| T |
2580055 |
gggcggtggggcttacttacaacttgaatgaaatttggatttgaggaagtgtatatgacaggtattgggataaactgagaaagatgtctacttgaatgcc |
2579956 |
T |
|
| Q |
316 |
aactcgagtctcgaattaccg-aagatagcttagggttggtgaggggcttttggagcaatacgagaggcgcacttagcctcactgtttt------caa-- |
406 |
Q |
| |
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|| || ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
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| T |
2579955 |
aa-------cttgaattaccgaaagatagcttatggttggtgaggggcttttggagcaatactagaggcgcacttagcctcactgtttttgaaaccaact |
2579863 |
T |
|
| Q |
407 |
-----aaccatgaattcacattgtccacggttcacttatttaagtggtatgatcacaactcagttgtagttttagcgctgtgtataaatgttggtgagca |
501 |
Q |
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| T |
2579862 |
ggttgaaccatgaattgacattgtccacggttcacttatttaagtggtatgacgacaactcagtcgtggttt--gagatgtgtgtaaatgttggtgagca |
2579765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 503 - 544
Target Start/End: Original strand, 48898744 - 48898785
Alignment:
| Q |
503 |
caggggcagacctcaacagggcagggtgtggcaatagccaca |
544 |
Q |
| |
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||||||| ||||| | |||||||||||||||||||||||||| |
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| T |
48898744 |
caggggcggacctgagcagggcagggtgtggcaatagccaca |
48898785 |
T |
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