View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_high_6 (Length: 397)
Name: NF14935_high_6
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 174 - 379
Target Start/End: Original strand, 35902241 - 35902442
Alignment:
| Q |
174 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaatatattggacataccttgatgaaattac |
273 |
Q |
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| T |
35902241 |
tcctagttctttatgatggtcgacgtgctctaaagtaatagaaaattgaaattctctaaataaaactagaaat----tggacataccttgatgaaattac |
35902336 |
T |
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| Q |
274 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902337 |
gttggatgagacgatcgataagaaacaaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaat |
35902436 |
T |
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| Q |
374 |
tccagt |
379 |
Q |
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|||||| |
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| T |
35902437 |
tccagt |
35902442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 35902140 - 35902245
Alignment:
| Q |
18 |
aaaatataattcaagttaatggaagaaatggtgcttgaaattgatagtgtaatccagattgttcgatctcagatcaacgatcgagatcaattaccacgta |
117 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902140 |
aaaatataattcaagttaatggaagagacggtgcttgaaattgatagtgtaatccagattgttcgatctcagatcaacgatcgagatcaattaccacgta |
35902239 |
T |
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| Q |
118 |
aaccta |
123 |
Q |
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| |||| |
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| T |
35902240 |
atccta |
35902245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 37024571 - 37024491
Alignment:
| Q |
299 |
caaaagaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagt |
379 |
Q |
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|||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
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| T |
37024571 |
caaaaggatgtctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagt |
37024491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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