View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_low_2 (Length: 631)
Name: NF14935_low_2
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 316 - 616
Target Start/End: Original strand, 31982934 - 31983235
Alignment:
| Q |
316 |
tttcgtgaaatgtaaataggacacttaaaataaaattgtaaagaaattaaggacaagatacacattttgacaccggggaaagaaattaaacttggtggac |
415 |
Q |
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| T |
31982934 |
tttcgtgaaatgtaaataggacacttaaaataaaattgtaaagaaattaaggacaagatacacattttgacaccggggaaagaaattaaacttggtggac |
31983033 |
T |
|
| Q |
416 |
gtcattctctccatgattcttttttgaagtttgattaacactacactaaatacttgctatgtcgaccaaatattagaatctcctctaatc-nnnnnnnnn |
514 |
Q |
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| T |
31983034 |
gtcattctctccatgattcttttttgaagtttgattaacactacactaaatgcttgctatgtcgaccaaatattagaatctcctctaatctttttatttt |
31983133 |
T |
|
| Q |
515 |
nnnncacagaacaatttatgcaactcttttccaccatttgtttttagcctcatnnnnnnngataacgtagacagaacctgcttgtgaataatagcttaaa |
614 |
Q |
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| T |
31983134 |
ttttcacagaacaatttatgcaactcttttccaccatttgtttttagcctcataaaaaaagataacgtagacagaacctgcttgtgaataatagcttaaa |
31983233 |
T |
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| Q |
615 |
ct |
616 |
Q |
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|| |
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| T |
31983234 |
ct |
31983235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 31982633 - 31982869
Alignment:
| Q |
16 |
atgaacacgtaaagaacaggaatttaaatcaaagcttttgaagaacaaatgaacaacaaaaggaaggacaaattataaacataaagaagatannnnnnn- |
114 |
Q |
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| T |
31982633 |
atgaacacgtaaagaaccggaatttaaatcaaagcttttgaagaacaaatgaacaacaaaaggaaggacaaattataaacataaagaagatacttttttt |
31982732 |
T |
|
| Q |
115 |
attaagtagtttagtggttacattcacccacattaagtgtggagaatttggggttcgaaccccgacccttgtacataatgtttctgataactaacaattg |
214 |
Q |
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| T |
31982733 |
atcaagtagtttagtggttacattcacccacattaagtgtggagaatttggggttcgaaccccgacccctgtacataatgtttttgataactaacaattg |
31982832 |
T |
|
| Q |
215 |
agctacatttatgggacaagaatatactttgtatggt |
251 |
Q |
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| T |
31982833 |
agctacatttatgggacaagaatatactttgtatggt |
31982869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 7683497 - 7683453
Alignment:
| Q |
116 |
ttaagtagtttagtggttacattcacccacattaagtgtggagaa |
160 |
Q |
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| T |
7683497 |
ttaagtagtttagtggttagattcacacacattatgtgtggagaa |
7683453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 194
Target Start/End: Complemental strand, 9587635 - 9587599
Alignment:
| Q |
158 |
gaatttggggttcgaaccccgacccttgtacataatg |
194 |
Q |
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| T |
9587635 |
gaatttagggttcgaaccccgacccttgcacataatg |
9587599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 116 - 160
Target Start/End: Complemental strand, 42657621 - 42657577
Alignment:
| Q |
116 |
ttaagtagtttagtggttacattcacccacattaagtgtggagaa |
160 |
Q |
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| T |
42657621 |
ttaagtagtttagtggttaaattcacacacattatgtgtgaagaa |
42657577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 182
Target Start/End: Complemental strand, 34028206 - 34028142
Alignment:
| Q |
118 |
aagtagtttagtggttacattcacccacattaagtgtggagaatttggggttcgaaccccgaccc |
182 |
Q |
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|||||||||| |||||| |||||| ||||||| ||||||||||| || |||| ||| ||||||| |
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| T |
34028206 |
aagtagtttaatggttagattcacacacattatgtgtggagaatccggagttcaaactccgaccc |
34028142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 153 - 181
Target Start/End: Original strand, 48977432 - 48977460
Alignment:
| Q |
153 |
gtggagaatttggggttcgaaccccgacc |
181 |
Q |
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| T |
48977432 |
gtggagaatttggggttcgaaccccgacc |
48977460 |
T |
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