View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_low_3 (Length: 488)
Name: NF14935_low_3
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 37574569 - 37575038
Alignment:
| Q |
1 |
gcatgaggatgaggccaatacaaccaaatttactatacaataccctctctctcttccatgcatgcatgatgcatccatataccatacaaccttggtaagt |
100 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574569 |
gcatgaggatgaggccaatacaaccaaatttacaatacaataccctctctctcttccatgcatgcatgatgcatccatataccatacaaccttggtaagt |
37574668 |
T |
|
| Q |
101 |
agtactatagctagttaataccgtttgtatttatctggagtactataccataaccacctgcaattataaatcactactgcctcatatgttttttgttcta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574669 |
agtactatagctagttaataccgtttgtatttatctggagtactataccataaccacctgcaattataaatcactactgcctcatatgttttttgttcta |
37574768 |
T |
|
| Q |
201 |
gtgcactgcacatattaatattaattaccactaccatttcaagacaaactactccgacacattttctgtcagatgttccttaaacattacatgcatatat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574769 |
ctgcactgcacatattaatattaattaccactaccatttcaagacaaactactccgacacattttctgtcagatgttccttaaacattacatgcatatat |
37574868 |
T |
|
| Q |
301 |
taataaccattaaccagtctagtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaatctaagacatatgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||| |
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| T |
37574869 |
taataaccattaaccagtctagtgtatcaattttcatccaatttaaaatacttatactaagactctagagaaatcaaaccctcaaatctaagacatatgt |
37574968 |
T |
|
| Q |
401 |
ataattaagaagtagtgtgatttggtttggtaaaataaattcgaagaaattattgaaccaatcaaagatc |
470 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37574969 |
ataattaagaagtagtatgatttggtttggtaaaataaattcgaagaaattattgaaccaatcaaagatc |
37575038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 331 - 465
Target Start/End: Complemental strand, 32969926 - 32969791
Alignment:
| Q |
331 |
ttttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtgatttggtttg |
429 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||||||||| |||| |||||| |||| |||||||||||||||| |||||||| |||||||||||| |
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| T |
32969926 |
ttttcatccaatttaaattacttataataacactccagagaaattaaactctcaaaatctaggacatatgtataattatgaagtagtatgatttggtttg |
32969827 |
T |
|
| Q |
430 |
gtaaaataaattcgaagaaattattgaaccaatcaa |
465 |
Q |
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||| ||| |||||||||||||||||||||||||||| |
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| T |
32969826 |
gtagaattaattcgaagaaattattgaaccaatcaa |
32969791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 321 - 465
Target Start/End: Complemental strand, 37167799 - 37167656
Alignment:
| Q |
321 |
agtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtg |
419 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| |||||| |||||||| ||| |||||| |||||||||||||||||||||||||||||| || |
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| T |
37167799 |
agtgtatcaattttcccccaatttaaattacttataataacacg--agagaaattaaattctcaaaatctaagacatatgtataattaagaagtagtatg |
37167702 |
T |
|
| Q |
420 |
atttggtttggtaaaataaattcgaagaaattattgaaccaatcaa |
465 |
Q |
| |
|
||||||||||||||||| |||||||| |||| |||||||||||||| |
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|
| T |
37167701 |
atttggtttggtaaaattaattcgaaaaaataattgaaccaatcaa |
37167656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 407 - 463
Target Start/End: Original strand, 54683514 - 54683570
Alignment:
| Q |
407 |
aagaagtagtgtgatttggtttggtaaaataaattcgaagaaattattgaaccaatc |
463 |
Q |
| |
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|||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
54683514 |
aagaagtagtatgatttggtttggtaaaattaattcgaagaaattattgaaccaatc |
54683570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 321 - 423
Target Start/End: Original strand, 54683398 - 54683499
Alignment:
| Q |
321 |
agtgtatcaattttcatccaatttaaaatacttatactaacactccagagaaatcaaacactcaaa-tctaagacatatgtataattaagaagtagtgtg |
419 |
Q |
| |
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||||||||||||||| ||||||||||| || ||||| |||||| |||||||| ||| |||||| |||| ||||||||||||||||||||||||| || |
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| T |
54683398 |
agtgtatcaattttcctccaatttaaattatttataataacacg--agagaaattaaattctcaaaatctaggacatatgtataattaagaagtagtatg |
54683495 |
T |
|
| Q |
420 |
attt |
423 |
Q |
| |
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|||| |
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|
| T |
54683496 |
attt |
54683499 |
T |
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