View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14935_low_7 (Length: 242)
Name: NF14935_low_7
Description: NF14935
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14935_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 21 - 242
Target Start/End: Original strand, 54220003 - 54220224
Alignment:
| Q |
21 |
aagatataatgtcttcagatttgtgaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgag |
120 |
Q |
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| T |
54220003 |
aagatataatgtcttcagatttgggaagcaaataccatcaggtataaacatatggacgccagattctaaatacaacttattcaatgagtgagaagatgag |
54220102 |
T |
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| Q |
121 |
aaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataacaaaatattaactt |
220 |
Q |
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| T |
54220103 |
aaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggactttgtgcttcagtgcataagataacaaaatattaactt |
54220202 |
T |
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| Q |
221 |
tccatgcatcatatatatcaat |
242 |
Q |
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| T |
54220203 |
tccatgcatcatatatatcaat |
54220224 |
T |
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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 17594406 - 17594279
Alignment:
| Q |
83 |
attctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggac |
182 |
Q |
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| T |
17594406 |
attctaaacacaacttattcaatgattgggatgctgagaaattattgggtaacacaaacctagcaaatgtatggtctagggaaagtttaagatcaaggag |
17594307 |
T |
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| Q |
183 |
tttgtgcttcagtgcataagataacaaa |
210 |
Q |
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| T |
17594306 |
tttgtgcatcaatgctgaagataacaaa |
17594279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 210
Target Start/End: Original strand, 14729081 - 14729208
Alignment:
| Q |
83 |
attctaaatacaacttattcaatgagtgagaagatgagaaattatggggtaacttaaacctagaatctataaaatttagggaaagtttaagatcaaggac |
182 |
Q |
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| T |
14729081 |
attctaagcacaacttattcaatgattgggatgctgagaaattattgggtaacacaaacctagcaaatgtttggtctagggaaagtttaagatcaaggag |
14729180 |
T |
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| Q |
183 |
tttgtgcttcagtgcataagataacaaa |
210 |
Q |
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| T |
14729181 |
tttgtgcatcaatgctgaagataacaaa |
14729208 |
T |
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